Locus 4630

Sequence ID 3L_DroMel_CAF1
Location 13,166,791 – 13,166,889
Length 98
Max. P 0.772857
window7268

overview

Window 8

Location 13,166,791 – 13,166,889
Length 98
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 85.00
Mean single sequence MFE -26.53
Consensus MFE -18.72
Energy contribution -20.16
Covariance contribution 1.44
Combinations/Pair 1.05
Mean z-score -2.00
Structure conservation index 0.71
SVM decision value 0.53
SVM RNA-class probability 0.772857
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13166791 98 - 23771897
AUUUAGGGGAACCUUGGUCCUGGCAUUAGAACAAAUCAACUGGGGACC--AUGGUCCA------------------CACACAGCAAUGUCCCCAAAAAGGACCUCUCUUUUCAUCCCC
.....(((((.....((((((.......((.....))...(((((((.--.((((...------------------.)).)).....)))))))...))))))..........))))) ( -27.26)
>DroSec_CAF1 18346 98 - 1
AUUUAGGGGAACCUCGGUCCUGGCAUUAGAACAAAUCAACUGGGGACC--AUGGUCCA------------------CACACAACGAUGUCCCCAAAAAGGACCUCUCUUUUCAUCCCC
.....(((((.....((((((.......((.....))...(((((((.--((.((...------------------......)).)))))))))...))))))..........))))) ( -27.96)
>DroSim_CAF1 16568 98 - 1
AUUUAGGGGAACCUUGGUCCUGGCAUUAGAACAAAUCAACUGGGGACC--AUGGUCCA------------------CACACAGCGAUGUCCCCAAAAAGGACCUCUCUUUUCAUCCCC
.....(((((.....((((((.......((.....))...(((((((.--((.((...------------------......)).)))))))))...))))))..........))))) ( -28.96)
>DroEre_CAF1 21696 98 - 1
AUUUAAGGGAACCUUGGUC-GGGCAUUAGAACAAAUCAACUGGGUUGCCGGUCGUCCA------------------CAUGCAGCAAUGUCCCCAA-AAGGACCUCCCUUUUCGUCCCC
....((((((.((((....-(((((((.((.....))......(((((.((....)).------------------...))))))))))))....-))))...))))))......... ( -25.30)
>DroYak_CAF1 17025 116 - 1
UUUUAAGGGAACCUUGGUCCUGGUAUUAGAACAAAUCAACUGGGGAAC--AUGGUCCACACACAAAAACACACACACACACAGCAAUGUCCCCAAAAAGGACCUCUCUUUUCAUCCCC
......((((.....((((((.((......))........((((((.(--((.((...........................)).)))))))))...))))))..........)))). ( -23.19)
>consensus
AUUUAGGGGAACCUUGGUCCUGGCAUUAGAACAAAUCAACUGGGGACC__AUGGUCCA__________________CACACAGCAAUGUCCCCAAAAAGGACCUCUCUUUUCAUCCCC
.....(((((.....((((((.......((.....))...(((((((......((........................))......)))))))...))))))..........))))) (-18.72 = -20.16 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:57 2006