Locus 4628

Sequence ID 3L_DroMel_CAF1
Location 13,163,052 – 13,163,149
Length 97
Max. P 0.537196
window7265

overview

Window 5

Location 13,163,052 – 13,163,149
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 98.56
Mean single sequence MFE -21.36
Consensus MFE -21.60
Energy contribution -21.36
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.12
Structure conservation index 1.01
SVM decision value 0.01
SVM RNA-class probability 0.537196
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13163052 97 + 23771897
UUCAAGCGUAAGAAACUAAUUUCUGCCAGUCGCAAAUCCGCGAGAUAUCGAACCAGACAGUCAACGAGACUUAACUCUCGUGCAUAUGCGCUCAUUC
....(((((((((((....)))))((...((((......))))(((.((......))..))).((((((......))))))))...))))))..... ( -22.40)
>DroSec_CAF1 14639 97 + 1
UUCAAGCGUAAGAAACUAAUUUCUGCCAGUCGCAAAUCCGCGAGAUAUCGAACCAGACAGUCAACGAGACUUAACUCUCGUGCAUAUGCGCUCAUUC
....(((((((((((....)))))((...((((......))))(((.((......))..))).((((((......))))))))...))))))..... ( -22.40)
>DroSim_CAF1 12875 97 + 1
UUCAAGCGUAAGAAACUAAUUUCUGCCAGUCGCAAAUCCGCGAGAUAUCGAACCAGACAGUCAACGAGACUUAACUCUCGUGCAUAUGCGCUCAUUC
....(((((((((((....)))))((...((((......))))(((.((......))..))).((((((......))))))))...))))))..... ( -22.40)
>DroEre_CAF1 17993 97 + 1
UUCAAGCGUAAGAAACUAAUUUCUGCCAGUCGCAAAUCCGCGAGAUAUCGAACCAGACAGUCAACGAGACUUAACUUUCGUGCAUAUGCGCUCUUUC
....(((((((((((....)))))((...((((......))))(((.((......))..))).((((((......))))))))...))))))..... ( -19.80)
>DroYak_CAF1 13122 97 + 1
UUCAAGCGUAAGAAACUAAUUUCUGCCAGUCGCAAAUUCGCGAGAUAUCGAACCAGACAGUCAACGAGACUUAACUUUCGUGCAUAUGCGCUCAUUC
....(((((((((((....)))))((...((((......))))(((.((......))..))).((((((......))))))))...))))))..... ( -19.80)
>consensus
UUCAAGCGUAAGAAACUAAUUUCUGCCAGUCGCAAAUCCGCGAGAUAUCGAACCAGACAGUCAACGAGACUUAACUCUCGUGCAUAUGCGCUCAUUC
....(((((((((((....)))))((...((((......))))(((.((......))..))).((((((......))))))))...))))))..... (-21.60 = -21.36 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:54 2006