Locus 4627

Sequence ID 3L_DroMel_CAF1
Location 13,162,730 – 13,162,824
Length 94
Max. P 0.624899
window7264

overview

Window 4

Location 13,162,730 – 13,162,824
Length 94
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 91.15
Mean single sequence MFE -31.97
Consensus MFE -27.49
Energy contribution -27.13
Covariance contribution -0.36
Combinations/Pair 1.15
Mean z-score -1.55
Structure conservation index 0.86
SVM decision value 0.19
SVM RNA-class probability 0.624899
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13162730 94 - 23771897
AGUUCUCC-GUGCGGAGGAAGUGCUGAAACAACAGCGUAAAGCUUUUAAAUGGCCAUAUGGGGC-------------CCCAUGUAGAUUAGACAUGCCUCCGGGGAGG
....((((-...((((((....((((......))))...............((((......)))-------------).(((((.......))))))))))).)))). ( -31.00)
>DroPse_CAF1 19526 106 - 1
AGUCCUGC--ACCAGAGCAAGUGCUGAAACAACAGCGUAAAGCUUUUAAAUGGCCAUAUGGGGCGCUACCCCCACCCCCCAUGUAGAUUAGACAUGCCCCUGGGGGGG
.(.((...--...(((((...(((((......)))))....))))).....)).)...(((((......)))))(((((((.(((.........)))...))))))). ( -33.20)
>DroSec_CAF1 14302 94 - 1
AGUUCUCC-GAGCGGAGGAAGUGCUGAAACAACAGCGUAAAGCUUUUAAAUGGCCAUAUGGGGC-------------CCCGUGUAGAUUAGACAUGCCUCCGGGGAGG
....((((-...((((((....((((......))))...............((((......)))-------------).(((((.......))))))))))).)))). ( -30.60)
>DroSim_CAF1 12538 94 - 1
AGUUCUCC-GAGCGGAGGAAGUGCUGAAACAACAGCGUAAAGCUUUUAAAUGGCCAUAUGGGGC-------------CCCGUGUAGAUUAGACAUGCCUCCGGGGAGG
....((((-...((((((....((((......))))...............((((......)))-------------).(((((.......))))))))))).)))). ( -30.60)
>DroEre_CAF1 17659 94 - 1
AGUCCUCC-GAGCGGAGGAAGUGCUGAAACAACAGCGUAAAGCUUUUAAAUGGCCAUAUGGGGC-------------CCCAUGUAGAUUAGACAUGCCUCCGGGGAGG
...(((((-...((((((....((((......))))...............((((......)))-------------).(((((.......))))))))))).))))) ( -33.00)
>DroYak_CAF1 12811 95 - 1
AGUUCUCCGGAGCGGAGGAAGUGCUGAAACAACAGCGUAAAGCUUUUAAAUGGCCAUAUGGGGC-------------CCCAUGUAGAUUAGACAUGCCUCCGGGGAGG
..(((((((((((((.((((((((((......)))).....))))))....((((......)))-------------)))((((.......))))).)))))))))). ( -33.40)
>consensus
AGUUCUCC_GAGCGGAGGAAGUGCUGAAACAACAGCGUAAAGCUUUUAAAUGGCCAUAUGGGGC_____________CCCAUGUAGAUUAGACAUGCCUCCGGGGAGG
...(((((....((((((....((((......))))((...(((.......))).(((((((...............))))))).......))...)))))).))))) (-27.49 = -27.13 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:53 2006