Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,162,502 – 13,162,616 |
Length | 114 |
Max. P | 0.576862 |
Location | 13,162,502 – 13,162,616 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.65 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -16.78 |
Energy contribution | -17.66 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.19 |
Mean z-score | -1.61 |
Structure conservation index | 0.74 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13162502 114 - 23771897 AAUAUCAAGCGAGACAAUGGCGUCUUGAGCUAAGAAAAGUAUAAAAGGUUUCUAUGAAAGGAGAGAUUUAUUGAAAGCCUUGCAAAUUAAAGAGGGGAUGACCAUU------UGAUAUUA (((((((((((((.(..((((.......)))).........(((.((((((((.(....).)))))))).)))...).)))))..........((......))..)------))))))). ( -23.70) >DroSec_CAF1 14071 114 - 1 AAUAUCAAGCGAGACAAUGGCGUCUUCAGCUAAGAAAAGUAUAAAAGGUUUGCAUGAAAGGAGAGAUUUAUUGAAGGUCUUGCAAAUUUAAGAGGGGAUGACCUGA------GGAUAUGA .(((((..(((((((..((((.......))))...........(((..(((.(......).)))..))).......))))))).........(((......)))..------.))))).. ( -22.20) >DroSim_CAF1 12307 114 - 1 AAUAUCAAGCGAGACAAUGGCGUCUUCAGCUAAGAAAAGUAUAAAAGGUUUGCAUGAAAGGAGAGAUUUAUUGAAGGUCUUGCAAAUUAAAGAGGGGAUGACCAUA------AGAUAUUA ((((((..(.....).(((((((((((.(((......)))......((((((((.((.....((......)).....)).)))))))).....))))))).)))).------.)))))). ( -23.50) >DroEre_CAF1 17431 114 - 1 AAUAUCAAGCGAAACAAAGGCAUAGUCAGCUGAGAAAAGCAUAAAAGGUUUUCCUGAAAGGACAGAUUUAAUGAAGGACUUGCAAAUGAAUGAGGGGAUGACCAGA------GGAUAUUA ((((((...(....((...(((.((((.(((......))).....(((((((((.....))).)))))).......)))))))...)).....((......)).).------.)))))). ( -22.10) >DroYak_CAF1 12572 120 - 1 AAUAUCAAGCGAAACAAAGGCAUAUUCAGCCACGGAAAGUAUAAAAGGUUUCCAUGAAAGAAGAGAUUCAUUGAAGGUCUUGUAAACUGAAGAGGGGAUGACCAGAGGAAGAGGAUAUUA ((((((.......((((.(((...(((((.((.(((((.(......).))))).))...(((....))).))))).)))))))...((......((.....))......))..)))))). ( -21.30) >consensus AAUAUCAAGCGAGACAAUGGCGUCUUCAGCUAAGAAAAGUAUAAAAGGUUUCCAUGAAAGGAGAGAUUUAUUGAAGGUCUUGCAAAUUAAAGAGGGGAUGACCAGA______GGAUAUUA ((((((..(((((((...(((.......))).................((((.(((((........))))).)))))))))))..........((......))..........)))))). (-16.78 = -17.66 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:53 2006