Locus 4624

Sequence ID 3L_DroMel_CAF1
Location 13,161,442 – 13,161,533
Length 91
Max. P 0.849346
window7260

overview

Window 0

Location 13,161,442 – 13,161,533
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 96.04
Mean single sequence MFE -27.34
Consensus MFE -21.64
Energy contribution -22.64
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.14
Structure conservation index 0.79
SVM decision value 0.78
SVM RNA-class probability 0.849346
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13161442 91 - 23771897
AUUCGGGUUCAUUUCCCGCUUCCUGUUUUGCGCAUUGUGCGAAAUUGUCGCGCGAUUUUUGCCCCCCAUGGGCGGGCUCAUAAAUCGUCCU
....(((.......)))((..(..(((((((((...))))))))).)..))(((((((..((((((....)).))))....)))))))... ( -32.50)
>DroSec_CAF1 13037 90 - 1
AUUCGGGUUCAUUUCCCGCAUCCUGUUUAGCGCAUUGUGCGAAAUUGUCGCGCGAUUUUUGCC-CCCAUGGUCGGGCUCAUAAAUCGUCCU
.((((((.......)))((((..(((.....)))..)))))))......(.(((((((..(((-(........))))....))))))).). ( -24.90)
>DroSim_CAF1 11268 91 - 1
AUUCGGGUUCAUUUCCCGCACCCUGUUUUGCGCAUUGUGCGAAAUUGUCGCUCGAUUUUUGCCCCCCAUGGUCGGGCUCAUAAAUCGUCCU
....(((.......)))((((...(((((((((...))))))))).)).)).((((((..((((.(....)..))))....)))))).... ( -25.90)
>DroEre_CAF1 16432 91 - 1
AUUCGGGUUCAUUUCCCGCUUCCUGUUUUGCGCAUUGUGCGAAAUUGUCGCGCGAUUUUUGCCCCCCAUGGUCGCGCUCAUAAAUCGUCCU
...((((.......))))...........(((((((((((((.....)))))))))....(((......))).)))).............. ( -24.40)
>DroYak_CAF1 11490 91 - 1
AUUCGGGUUCAUUUCCCGCUUCCUGUUUUGCGCAUUGUGCGAAAUUGUCGCGCGAUUUUUGCCCCCCAUGGACGAGCUCAUAAAUCGUCCU
....((((..(..((.(((..(..(((((((((...))))))))).)..))).))..)..)))).....((((((.........)))))). ( -29.00)
>consensus
AUUCGGGUUCAUUUCCCGCUUCCUGUUUUGCGCAUUGUGCGAAAUUGUCGCGCGAUUUUUGCCCCCCAUGGUCGGGCUCAUAAAUCGUCCU
....(((.......)))((..(..(((((((((...))))))))).)..))(((((((..((((((...))..))))....)))))))... (-21.64 = -22.64 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:50 2006