Locus 4623

Sequence ID 3L_DroMel_CAF1
Location 13,161,189 – 13,161,281
Length 92
Max. P 0.873075
window7259

overview

Window 9

Location 13,161,189 – 13,161,281
Length 92
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 81.23
Mean single sequence MFE -18.02
Consensus MFE -12.23
Energy contribution -12.28
Covariance contribution 0.06
Combinations/Pair 1.18
Mean z-score -2.34
Structure conservation index 0.68
SVM decision value 0.88
SVM RNA-class probability 0.873075
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13161189 92 + 23771897
--------UAUUUCCCCCC----CAUUUGUUGACUUUGUCAGCAUUAUUUCACUCGUUUUCAACUGGUGAUGUCAAUGUUUAUUAAUAUUUGACAUUCAG-CACC
--------...........----....((((((...((((((((((((.(((((.((.....)).))))).)).)))))...........))))).))))-)).. ( -17.70)
>DroPse_CAF1 18546 105 + 1
AAGACCCCUAUUCCUUCUCUAUUUAUUUGAUGGCUUUGCCAGCGCUCGUUCGCUCAGUUUGAGCUGCUCUUGUCAGUGUUUAUUAAUAUUUGACUUCCACUCACC
((((..........................((((...))))(((((((..(.....)..))))).))))))(((((((((....)))).)))))........... ( -18.70)
>DroSec_CAF1 12781 92 + 1
--------UAUUUUUCCCC----CAUUUGUUGACUUUGUCAGCAUUAUUUCACUCGUUUUCAACUGGUGCCGUCAAUGUUUAUUAAUAUUUGACAUUCAG-CACC
--------...........----....(((((((...))))))).....................(((((.(((((((((....)))).))))).....)-)))) ( -16.90)
>DroSim_CAF1 11011 93 + 1
--------UAUUUUUCCCC---UUAUUUGUUGACUUUGUCAGCAUUAUUUCACUCGUUUUCAACUGGUGCCGUCAAUGUUUAUUAAUAUUUGACAUUCAG-CACC
--------...........---.....(((((((...))))))).....................(((((.(((((((((....)))).))))).....)-)))) ( -16.90)
>DroEre_CAF1 16173 90 + 1
--------UAUUGCCC-CC----UUUUUGUUGACUUUGUCAGCAUAA-UUCGCUCGUUUUGAACUGGUGCUGUCAAUGUUUAUUAAUAUUUGACAUCCAC-CACC
--------....((..-..----....(((((((...)))))))...-...))...........(((((.((((((((((....)))).))))))..)))-)).. ( -19.54)
>DroYak_CAF1 11237 92 + 1
--------GAUUGCCCCCC----UUUUUGUUGACUUUGUCAGCAUUAUUUCACUCGUUUUGCACUGGUGCUGUCAAUGUUUAUUAAUAUUUGACAUUCGC-CACC
--------...........----....(((((((...)))))))....................(((((.((((((((((....)))).))))))..)))-)).. ( -18.40)
>consensus
________UAUUUCCCCCC____UAUUUGUUGACUUUGUCAGCAUUAUUUCACUCGUUUUCAACUGGUGCUGUCAAUGUUUAUUAAUAUUUGACAUUCAC_CACC
...........................(((((((...)))))))......((((.((.....)).))))..(((((((((....)))).)))))........... (-12.23 = -12.28 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:49 2006