Locus 4621

Sequence ID 3L_DroMel_CAF1
Location 13,159,146 – 13,159,258
Length 112
Max. P 0.512109
window7256

overview

Window 6

Location 13,159,146 – 13,159,258
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 90.80
Mean single sequence MFE -37.76
Consensus MFE -27.88
Energy contribution -28.80
Covariance contribution 0.92
Combinations/Pair 1.16
Mean z-score -1.63
Structure conservation index 0.74
SVM decision value -0.04
SVM RNA-class probability 0.512109
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13159146 112 + 23771897
UGAGUCUAGGCCUCCGGUUUGGACUUGGUAGUUCUUUCUAGUUUACCUCCGGGGCAAAGACGAAUGAAUGGCGUUGAGACCUCCAUUCUGUUCUCUGUCGGCCAGGAGUUAU
.(((((((((((...)))))))))))(((((..((....)).)))))(((..(((..(((.((((((((((.(.......).)))))).)))))))....))).)))..... ( -37.50)
>DroSec_CAF1 10793 112 + 1
UGAGUCUAGGCCUCCGGUUUGAACUUGGUAAUUCUUUCUAGUUUACCUCCGGGGCAAAGACGAACGAAUGGCGUUGAGGCCUCCAUUCUGUUCUCUGUCGGCCAGGAGUUAU
(((.(((.((((.((((..((((((.((........)).))))))...))))((((..((.((((((((((.((....))..)))))).)))))))))))))).))).))). ( -39.00)
>DroSim_CAF1 9022 112 + 1
UGAGUCUAGGCCUCCGGUUUGGACUUGGUAAUUCUUUCUAGUUUACCUCCGGGGCAAAGACGAAUGAAUGGCGUUGAGGCCUCCAUUCUGUUCUCUGUCGGCCAGGAGUUAU
(((.(((.((((.((((..((((((.((........)).))))))...))))((((.(((((((((...(((......)))..))))).).))).)))))))).))).))). ( -39.60)
>DroEre_CAF1 14161 106 + 1
UGAGUCUAGGCCUCCGGUUUGGACUUGGUAAUUCUUUCUAGUUUGCCUCUGGGGCAA-AACGAAUGAAUGGCGUCGAGGCCUCUGUUCUGUUCUCCGACG-----GAGUUAU
.(((((((((((...))))))))))).((((((((.((...((((((.....)))))-)..(((((((((((......)))...)))).))))...)).)-----))))))) ( -35.30)
>DroYak_CAF1 9208 112 + 1
UGAGUCUAGGCCUCCGGUUUGGACUUGGUAAUUCUUUCUAACUUGCCUCCGGGGGAAAGAUGAAUGAAUGGCGUUGAGGCCGGGGUUCUGUUCUCUGUCGGCCAGGAGUUAU
.(((((((((((...))))))))))).(((((((((........(((..(((((((.....((((...((((......))))..))))..)))))))..))).))))))))) ( -37.40)
>consensus
UGAGUCUAGGCCUCCGGUUUGGACUUGGUAAUUCUUUCUAGUUUACCUCCGGGGCAAAGACGAAUGAAUGGCGUUGAGGCCUCCAUUCUGUUCUCUGUCGGCCAGGAGUUAU
.(((((((((((...)))))))))))(((((...........)))))(((..(((..(((.((((((((((.((....))..)))))).)))))))....))).)))..... (-27.88 = -28.80 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:46 2006