Locus 4620

Sequence ID 3L_DroMel_CAF1
Location 13,158,725 – 13,158,829
Length 104
Max. P 0.603533
window7255

overview

Window 5

Location 13,158,725 – 13,158,829
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.88
Mean single sequence MFE -27.70
Consensus MFE -14.00
Energy contribution -16.68
Covariance contribution 2.68
Combinations/Pair 1.14
Mean z-score -1.78
Structure conservation index 0.51
SVM decision value 0.14
SVM RNA-class probability 0.603533
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13158725 104 - 23771897
UUCAAAAUCCAUUAUU-UGAAGAUUUCUGGAUAAAUACACUGCUGCAAGAGCUUGAGAUAAUAAGUUUGUCUCCUUAUUUCGCAGUGUUAUUUUUUCCCAGGAGU---------------
((((((........))-)))).((((((((..(((.(((((((.((....))..(((((((.....)))))))........)))))))....)))..))))))))--------------- ( -29.90)
>DroSec_CAF1 10339 120 - 1
AUCUAUAUCCAUUAUUAUUUAGAUUUCUGGGUAGAUACGCAACUGCAAGGACUUGAGAUAAUAAGUUUGUCUCCUUAUUUCGCAGUGUUAUUUUUUCCCAGGAGUUAGUGCAGCCACCUU
.....................((((((((((.(((((.(((.(((((((.....(((((((.....)))))))....))).))))))))))))...)))))))))).(((....)))... ( -30.50)
>DroSim_CAF1 8549 119 - 1
AUCUAGAUCCAUUAUU-UGAAGAUUUCUGGGUAAAUACGCUGCUGCAAGGACUUGAGAUAAUAAGUUUGCCUCCUUAUUUCGCAGUGUUAUUUUUUCCCAGGAGUUAGUGCAGCCACCUU
................-....((((((((((.(((((((((((..(((....))).((.((((((........)))))))))))))).)))))...)))))))))).(((....)))... ( -29.80)
>DroEre_CAF1 12281 118 - 1
UACUAAGUCCAUUGAU-UAAAGUUUUUGGGGUGCAUACACGACUGCGAGGACUUCAGAUAAUAAGUUUGUCUUCUUAUUUCCAAGUGCUAUU-UUUCCCAGGAGCCAGCGGAUCCACAUU
......((((.(((..-....((((((((((((((........))))((.((((..((.((((((........)))))))).)))).))...-..))))))))))))).))))....... ( -25.30)
>DroYak_CAF1 8854 110 - 1
AUCUAAGUCCAUUAAU-UUUGGUUUUCGGGAUACAUACACGA---------CUUUAGAUAAUAAGUUUGUCUUCUUAUGUCCAAGUGUUACUCUUUCCCAGGAGCUAGUGCAGCCACAUU
................-..((((((..((((.....((((((---------(...((((((.....))))))......)))...)))).......))))..))))))(((....)))... ( -23.00)
>consensus
AUCUAAAUCCAUUAUU_UGAAGAUUUCUGGGUAAAUACACGACUGCAAGGACUUGAGAUAAUAAGUUUGUCUCCUUAUUUCGCAGUGUUAUUUUUUCCCAGGAGUUAGUGCAGCCACAUU
.....................((((((((((..........(((((........(((((((.....)))))))........)))))..........)))))))))).............. (-14.00 = -16.68 +   2.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:45 2006