Locus 4618

Sequence ID 3L_DroMel_CAF1
Location 13,156,753 – 13,156,853
Length 100
Max. P 0.962323
window7253

overview

Window 3

Location 13,156,753 – 13,156,853
Length 100
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.85
Mean single sequence MFE -29.45
Consensus MFE -14.54
Energy contribution -13.93
Covariance contribution -0.61
Combinations/Pair 1.14
Mean z-score -2.52
Structure conservation index 0.49
SVM decision value 1.54
SVM RNA-class probability 0.962323
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13156753 100 - 23771897
ACAAGGAACGCAGAUUGAUGGAUCCUCACAUUAAGUGGAUG--AUGUAGGAGACAAUGAUAAUUUUUCGUUAUUGUAUUCCGGUGAA-CCAAAAAUCAC----------UGUG-----
........(((((..(((((((((((.((((((......))--)))))))).((((((((........))))))))..)))((....-))....)))))----------))))----- ( -26.80)
>DroVir_CAF1 38187 100 - 1
---AUGGACACAGAUUGAUGGAAC--CACAUUAAGCCAAUG--AUGUAGGAGACAAUGAUAAUUUU--GUUAUUGUAUUCCGGCGAAA----CUUUUGCAAAACGCGGCCGCC-----
---..((.(.....((((((....--..))))))(((....--.....(((((((((((((....)--)))))))).)))).((((..----...)))).......))).)))----- ( -23.30)
>DroPse_CAF1 12377 104 - 1
--AACGAACACAGAUUGAUGGAUCCCCACAUUAAGCGGAUG--AUGUAGGAGACAAUGAUAAUUUUUUGUUAUUGUAUUCCGGGGAAAUGUGCCAUCGC----------UGUGCCAGA
--......(((((...(((((.(((((((((((......))--)))).((((((((((((((....)))))))))).)))))))))......))))).)----------))))..... ( -38.30)
>DroYak_CAF1 6896 100 - 1
ACAAGGAACGCAGAUUGAUGGAUCCGCACAUUAAGUGGAUG--AUGUAGGAGACAAUGAUAAUUUUUCGUUAUUGUAUUCCGGUGAA-CCAGAAAUCAC----------UGUG-----
........(((((........((((((.......))))))(--((...((((((((((((........)))))))).))))((....-))....))).)----------))))----- ( -27.10)
>DroMoj_CAF1 50723 95 - 1
---AUGGACACAGAUUGAUGGAUC--CACAUUAAGCGAAUGAGAUGUAGGAGACAAUGAUAAUUUU--GUUAUUGUGUUCCGGCGAAGUCUCCUUUUGCAG-----------C-----
---.((((..((......))..))--))......(((((.(((((((.(((((((((((((....)--)))))))).)))).))...)))))..)))))..-----------.----- ( -28.30)
>DroPer_CAF1 9216 101 - 1
--AACGAACACAGAUUGAUGGAUCCCCACAUUAAGCGGAUG--AUGUAGGAGACAAUGAUAAUUUUUUGUUAUUGUAUUCCGGGUAAAUGUGCCAUCGC----------UGUGCC---
--......(((((...(((((...(((((((((......))--)))).((((((((((((((....)))))))))).)))))))........))))).)----------))))..--- ( -32.90)
>consensus
__AACGAACACAGAUUGAUGGAUCC_CACAUUAAGCGGAUG__AUGUAGGAGACAAUGAUAAUUUUU_GUUAUUGUAUUCCGGCGAAAUCUGCAAUCGC__________UGUG_____
..............((((((........))))))((((..........((((((((((((........)))))))).))))..............))))................... (-14.54 = -13.93 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:42 2006