Locus 4617

Sequence ID 3L_DroMel_CAF1
Location 13,156,276 – 13,156,382
Length 106
Max. P 0.992133
window7252

overview

Window 2

Location 13,156,276 – 13,156,382
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 95.09
Mean single sequence MFE -33.14
Consensus MFE -26.48
Energy contribution -27.96
Covariance contribution 1.48
Combinations/Pair 1.03
Mean z-score -3.23
Structure conservation index 0.80
SVM decision value 2.31
SVM RNA-class probability 0.992133
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13156276 106 - 23771897
UUUGAUUGGGACCAACAGGUUUCCAUCAUCGUCUGGAAAUACUUGGGUUUGGGUUUUGGGUCCUCGAGAGCCCCAAACAUUUUCAUUCAGAUUUAAUUUAAAUCAC
..(((.((..(((((...(((((((........)))))))..))))(((((((((((((....))))))..)))))))..)..)).)))((((((...)))))).. ( -31.20)
>DroSec_CAF1 7963 106 - 1
UUUGAUUGGGACCAACAGGUUUCCAUCAUCGUCUGGAAAUGCUUGGGUUUGGGUUUUGGGUCCUCGAGAACCCCAAACAUUUUCAGUCAGAUUUAAUUUAAAUCAC
..((((.(..(((....)))..).))))..(.(((((((((.(((((((((((........)).))))...))))).))))))))).).((((((...)))))).. ( -33.50)
>DroSim_CAF1 6142 105 - 1
UUUGAUUGGGACCAAAAGGUUUCCAUCAUCGUCUGGAAAUGCUUGGGUUUGGGGUUUGGGUCCUCGAGAACCCCAAACAUU-UCAGUCAGAUUUAAUUUAAAUCAC
..((((((..(((((...(((((((........)))))))..))))(((((((((((..(....)..))))))))))).).-.))))))((((((...)))))).. ( -38.00)
>DroEre_CAF1 9824 106 - 1
UUUGAUUGGGACCAACAGGCUUCCAUCAUCGUCUUAAAAUGCUUGGGUUUGGGUUUUGGGUCCUCGAGAACCCCCAACAUUUUCAGUCAGAUUUAAUUUAAAUCAC
..((((.((((((....)).))))))))..(.((.((((((.(((((....((((((.(.....).))))))))))))))))).)).).((((((...)))))).. ( -28.50)
>DroYak_CAF1 6403 105 - 1
UUUGAUUGGGACCAACAGGUUUCCAUCAUCGUCUUGAAAUACUUGGGUUUGGGUUUUGGGUCCUCGAGAACC-CAAACAGUUUCAGUCAGAUUUAAUUUAAAUCAC
..((((((..((...(((((.....(((......)))...))))).(((((((((((.(.....).))))))-))))).))..))))))((((((...)))))).. ( -34.50)
>consensus
UUUGAUUGGGACCAACAGGUUUCCAUCAUCGUCUGGAAAUGCUUGGGUUUGGGUUUUGGGUCCUCGAGAACCCCAAACAUUUUCAGUCAGAUUUAAUUUAAAUCAC
..(((((((((((((...(((((((........)))))))..))))(((((((((((.(.....).)))))).)))))..)))))))))((((((...)))))).. (-26.48 = -27.96 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:41 2006