Locus 4616

Sequence ID 3L_DroMel_CAF1
Location 13,153,004 – 13,153,094
Length 90
Max. P 0.665693
window7251

overview

Window 1

Location 13,153,004 – 13,153,094
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.69
Mean single sequence MFE -22.19
Consensus MFE -10.65
Energy contribution -12.35
Covariance contribution 1.70
Combinations/Pair 1.05
Mean z-score -2.17
Structure conservation index 0.48
SVM decision value 0.28
SVM RNA-class probability 0.665693
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13153004 90 + 23771897
CCACGGAAUAUUCCCCGCCUUUGAAGU-CGAGU-UCGCCUGACACUGACGAACCGCGACUGGCUAUAUUCCACUAUAU----------AUGUACGUAUAUCC
....(((((((.....(((.....(((-((.((-(((.(.......).)))))..)))))))).)))))))...((((----------((....)))))).. ( -23.00)
>DroSec_CAF1 4629 86 + 1
CCACGGAAUAUUCCCCGCCUUUGAAGU-CGUGU-UCGCCUGACACUGACGAACCGCGACUGGCUAUAUUCCACUAUAU----------AUG----UAUAUCC
....(((((((.....(((.....(((-(((((-(((.(.......).)))).)))))))))).))))))).......----------...----....... ( -23.10)
>DroSim_CAF1 2846 86 + 1
CCACGGAAUAUUCCCCGCCUUUGAAGU-CGUGU-UCGCCUGACACUGACGAACCGCGACUGGCUAUAUUCCACUAUAU----------AUG----UAUACCC
....(((((((.....(((.....(((-(((((-(((.(.......).)))).)))))))))).))))))).......----------...----....... ( -23.10)
>DroEre_CAF1 6505 96 + 1
CCGCGGAAUAUUCCCCGCCUUUGAAGU-CGUGC-UCGCCUGACACUGACGAACCGCGACUGGCUAUAUUCCACUAUAUACGAGUAUGCCUG----UAUACUC
....(((((((.....(((.....(((-((((.-(((.(.......).)))..)))))))))).))))))).........(((((((....----))))))) ( -27.10)
>DroYak_CAF1 3048 86 + 1
CCACGGAAUAUUCCCCGCCUUUGAAGU-CGUGU-UCGCCUGACACUGACGAACCGCGACUGGCUAUAUUCCACUAUAU----------CUA----UACACUC
....(((((((.....(((.....(((-(((((-(((.(.......).)))).)))))))))).))))))).......----------...----....... ( -23.10)
>DroPer_CAF1 5047 75 + 1
-------------UCCGCCUUUGAUGUUCGUCUCUCGCCUGACACUGACGAACCGCGAUUCGCGUCUGCCCUCUCCAC----------CCC----UCCCCUC
-------------..(((..(((..(((((((..............)))))))..)))...)))..............----------...----....... ( -13.74)
>consensus
CCACGGAAUAUUCCCCGCCUUUGAAGU_CGUGU_UCGCCUGACACUGACGAACCGCGACUGGCUAUAUUCCACUAUAU__________AUG____UAUACCC
....(((((((.....(((.....(((.((((..(((.(.......).)))..)))))))))).)))))))............................... (-10.65 = -12.35 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:40 2006