Locus 4615

Sequence ID 3L_DroMel_CAF1
Location 13,152,044 – 13,152,138
Length 94
Max. P 0.569870
window7250

overview

Window 0

Location 13,152,044 – 13,152,138
Length 94
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 88.29
Mean single sequence MFE -36.90
Consensus MFE -33.31
Energy contribution -33.75
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.33
Structure conservation index 0.90
SVM decision value 0.07
SVM RNA-class probability 0.569870
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13152044 94 - 23771897
UGCCCACCACUGUCUCGUCUCGUCUAGUUGCGUCUUCAUAGUCUGUGCAGAUGGUGGAGUCGACUGGUGAGGGUGAGGCUGAUGGUCGAA-----------------GUGG
...(.(((((.((((((.(((..(((((((...((((((.((((....)))).)))))).)))))))...))))))))).).)))).)..-----------------.... ( -33.90)
>DroSec_CAF1 3679 94 - 1
UGCCCCCCACUGUCUCGUCUUGUCUAGUUGCGUCUUCAUAGUCUGUGCAGAUGGUGGAGUCGACUGGUGAGGGUGAGGCUGAUGGUCGGA-----------------GUGG
..((..((((.(((((..(((..(((((((...((((((.((((....)))).)))))).)))))))..)))..))))).).)))..)).-----------------.... ( -36.10)
>DroSim_CAF1 1896 94 - 1
UGCCCACCACUGUCUCGUCUCGUCUAGUUGCGUCUUCAUAGUCUGUGCAGAUGGUGGAGUCGACUGGUGAGGGUGAGGCUGAUGGUCGGA-----------------GUGG
.(((((((((.((((((.(((..(((((((...((((((.((((....)))).)))))).)))))))...))))))))).).)))).)).-----------------)).. ( -37.60)
>DroYak_CAF1 2044 111 - 1
UGCCCACCACUGUCUCGUCUCGUCUAGUUGCGUCUUCAUAGUCUGUGCAGAUGGUGGAGUCGACUGGCGAGGGCGAUGGUGAUGGUCGGAGUAGAGGAUAGAGUGGAGUGG
.(((((((((((((.(.(((((.(((((((...((((((.((((....)))).)))))).))))))))))))).)))))))....((......)).......)))).)).. ( -40.00)
>consensus
UGCCCACCACUGUCUCGUCUCGUCUAGUUGCGUCUUCAUAGUCUGUGCAGAUGGUGGAGUCGACUGGUGAGGGUGAGGCUGAUGGUCGGA_________________GUGG
..((.(((((.(((((((((((.(((((((...((((((.((((....)))).)))))).)))))))))).)))))))).).)))).))...................... (-33.31 = -33.75 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:39 2006