Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,146,346 – 13,146,465 |
Length | 119 |
Max. P | 0.748166 |
Location | 13,146,346 – 13,146,465 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.68 |
Mean single sequence MFE | -34.17 |
Consensus MFE | -29.80 |
Energy contribution | -30.05 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.87 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748166 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13146346 119 - 23771897 UGUCGGCCACUUUUGGUCGCAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAC-GCAGAGGCAGCAGAGAGGCCAGAAAAUUAUGAAAUAUUUGUGGCCG ..............((((((((((((((((.((((((((((((.....(((((..(......)..)))))...-((....)).)))..)))))))))......)))))))))))))))). ( -37.40) >DroSec_CAF1 134045 119 - 1 UGUCGGCCACUUUUGGUCGAAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAU-CCAGAGGCAGCAGAGCGGCCAGAAAAUUAUGAAAUAUUUGUGGACG .((((((((....)))))..((((((((((.((((((((((((..(((((....)))))..((((((....))-)))).....)))))..)))))))......))))))))))...))). ( -31.80) >DroSim_CAF1 133941 119 - 1 UGUCGGCCACUUUUGGUCGAAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAU-CCAGAGGCAGCAGAGCGGCCAGAAAAUUAUGAAAUAUUUGUGGCCG ...(((((((.((((((((....((((((((....((((.(.((((((((....)))))..))).).))))..-))))).)))......))))))))((((........))))))))))) ( -35.40) >DroYak_CAF1 135524 120 - 1 UGUCGGCCACUUUUGGUCGAAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAUCCCAGAGGCAGCAGAAAGGCCAGAAAAUUAUGAAAUAUUUGUGCCAA ..(((((((....)))))))((((((((((.((((((((((((..(((((....)))))..(((((.......))))).....)))))..)))))))......))))))))))....... ( -32.10) >consensus UGUCGGCCACUUUUGGUCGAAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAU_CCAGAGGCAGCAGAGAGGCCAGAAAAUUAUGAAAUAUUUGUGGCCG ..(((((((....)))))))((((((((((.((((((((((((......((((..(......)..))))((.........)).)))))..)))))))......))))))))))....... (-29.80 = -30.05 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:28 2006