Locus 4611

Sequence ID 3L_DroMel_CAF1
Location 13,145,913 – 13,146,009
Length 96
Max. P 0.507347
window7236

overview

Window 6

Location 13,145,913 – 13,146,009
Length 96
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.97
Mean single sequence MFE -20.62
Consensus MFE -14.44
Energy contribution -14.72
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.58
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.507347
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13145913 96 + 23771897
GAUGUCC--------------ACAUGCC----------CACUACACCAACCCCCAACAAUCCGCAUAAAUCGCCAAUCAAUUUUUAGUGGAUCUCCGGUCAUUUCGAUAUGGACAUGGAC
.((((((--------------(......----------....................((((((.((((.............))))))))))...(((.....)))...))))))).... ( -16.62)
>DroSec_CAF1 133599 110 + 1
GAUGUCCGUUCACAGAUAUCCCCAUGCC----------CACUACAGCAACCCCCAACAAUCCGCAUAAAUCGCCAAUCAAUUUUUAGUGGAUCUCCGGUCAUUUUGAUAUGGACAUGCAC
.(((((((((((.((((..((...(((.----------.......)))..........((((((.((((.............))))))))))....))..))))))).)))))))).... ( -22.72)
>DroSim_CAF1 133495 110 + 1
GAUGUCCGUUCACAGAAAUCCCCAUGCC----------CACUACAGCAACCCCCAACAAUCCGCAUAAAUCGCCAAUCAAUUUUUAGUGGAUCUCCGGUCAUUUCGAUAUGGACAUGGAC
.((((((((.....(((((..((.(((.----------.......)))..........((((((.((((.............))))))))))....))..)))))...)))))))).... ( -25.22)
>DroEre_CAF1 130557 118 + 1
GAUGUCCGUUCACAGAUAUCCCAAUAUCCCCAAAUCCCCACUACUGCA-CCCC-AACCGUCCGCAUAAAUCGCCAAUCAAUUUUUAGUGGAUCUCCGGUCAUUUCGAUAUGCACAUGCAC
((((.(((......(((((....)))))....................-....-....((((((.((((.............))))))))))...))).))))......(((....))). ( -16.92)
>DroYak_CAF1 135081 111 + 1
GAUGUCCGUUCACAGAUAUCCCCAUGCCC-------ACCACUA-UACA-CCCCAAACCAUCCGCAUAAAUUGCCAAUCAAUUUUUAGUGGAUCUCCGGUCAAUUCGAUAUGGACAUGCAC
((((((.(....).))))))..((((.((-------(......-....-.........((((((..((((((.....))))))...))))))...(((.....)))...))).))))... ( -21.60)
>consensus
GAUGUCCGUUCACAGAUAUCCCCAUGCC__________CACUACAGCAACCCCCAACAAUCCGCAUAAAUCGCCAAUCAAUUUUUAGUGGAUCUCCGGUCAUUUCGAUAUGGACAUGCAC
.((((((((.................................................((((((.((((.............))))))))))...(((.....)))..)))))))).... (-14.44 = -14.72 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:27 2006