Locus 461

Sequence ID 3L_DroMel_CAF1
Location 1,333,881 – 1,334,001
Length 120
Max. P 0.999976
window677

overview

Window 7

Location 1,333,881 – 1,334,001
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.83
Mean single sequence MFE -47.30
Consensus MFE -46.62
Energy contribution -45.82
Covariance contribution -0.80
Combinations/Pair 1.11
Mean z-score -3.01
Structure conservation index 0.99
SVM decision value 5.14
SVM RNA-class probability 0.999976
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1333881 120 - 23771897
AGCAGAAAACGAGUGGGAGUGGGUCGGCGGCCGCUGCCCGUCUGCAAAUCGAGGCGGAGUACAAGGACAAGGGGCCGCAAUGGCAUCGCUUCUACAAGGUAAUUGGCAACAACAACUGCG
.((((.......(((((((((((((.((((((.((..((((((........)))))).((......)).)).))))))...))).)))))))))).......(((....)))...)))). ( -50.40)
>DroSec_CAF1 6046 120 - 1
AGCAGAAAACGAGUGGGAGUGGGUCGGCGGCCGCGGCCCGUCUACAAAUCGAGGCGGAGUACAAGGAUAAAGGGCCGCAAUGGCAUCGCUUCUACAAGGUAAUUGGCAACAACAACUGCG
.((((.......(((((((((((((.((((((.(.((((((((........)))))).))...........)))))))...))).)))))))))).......(((....)))...)))). ( -47.20)
>DroSim_CAF1 6083 120 - 1
AGCAGAAAACGAGUGGGAGUGGGUCGGCGGCCGCGGCCCGUCUGCAAAUCGAGGCGGAGUACAAGGAUAAAGGGCCGCAAUGGCAUCGCUUCUACAAGGUAAUUGGCAACAACAACUGCG
.((((.......(((((((((((((.((((((.(.((((((((........)))))).))...........)))))))...))).)))))))))).......(((....)))...)))). ( -47.30)
>DroEre_CAF1 6225 120 - 1
AGCAGAAAACGAGUGGGAGUGGGUCAGCGGCCACGGCCCGUCUGCAAAUCGAGGCGGAGUACAAGGACAAAGGGCCGCAAUGGCAUCGCUUCUACAAGGUAAUUGGCAACAACAACUGCG
.((((.......((((((((((((((((((((.....((((((........)))))).((......))....))))))..)))).)))))))))).......(((....)))...)))). ( -48.20)
>DroYak_CAF1 6240 120 - 1
AGCAGAAAACGAGUGGGAGUGGGUCAGCGGUCACGGCCCGUCUGCAAAUCGAGGCGGAGUACAAGGACAAAGGGCCGCAAUGGCAUCGCUUUUACAAGGUAAUUGGCAACAACAACUGCG
.((((.......((((((((((....((.((..((((((.(((((........)))))((......))...))))))..)).)).)))))))))).......(((....)))...)))). ( -43.40)
>consensus
AGCAGAAAACGAGUGGGAGUGGGUCGGCGGCCGCGGCCCGUCUGCAAAUCGAGGCGGAGUACAAGGACAAAGGGCCGCAAUGGCAUCGCUUCUACAAGGUAAUUGGCAACAACAACUGCG
.((((.......((((((((((((((((((((.....((((((........)))))).((......))....))))))..)))).)))))))))).......(((....)))...)))). (-46.62 = -45.82 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:27 2006