| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,143,099 – 13,143,219 |
| Length | 120 |
| Max. P | 0.941571 |
| Location | 13,143,099 – 13,143,219 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.33 |
| Mean single sequence MFE | -28.06 |
| Consensus MFE | -24.68 |
| Energy contribution | -25.20 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13143099 120 - 23771897 AACCAUAGAUAAGCAGUCAUUUGCAUUUUGAGUGGCUUCACAAAAAUUAUAAACAUUAAUUUCUUUAUUUUCGAGUCCGAAGAGAGAGGAAAUGAUUUGUCAAAUGACUCGCAGUCAGGA ..((...(((..(((((((((((((..((..(((....))).................((((((((.((((((....))))))..))))))))))..)).))))))))).)).))).)). ( -29.10) >DroSec_CAF1 130795 120 - 1 AACCAUAGAUAAGCAGUCAUUUGCAUUUUGAGUGGCUUCAUAAAAAUUAUAAACAUUAAUUUCUUUAUUUUCGAGUCCGGAGAGAGAGGAAAUGAUUUGUCAAAUGACUCUCAGCCAGGA ..((........((((....))))........(((((.....................((((((((.((((((....))))))..))))))))((...(((....)))..))))))))). ( -25.30) >DroSim_CAF1 130696 120 - 1 AACCACAGAUAAGCAGUCAUUUGCAUUUUGAGUGGCUUCAUAAAAAUGAUAAACAUUAAUUUCUUUAUUUUCGAGUCCGGUGAGAGAGGAAAUGAUUUGUCAAAUGACUCGCAGCCAGGA ..((.((((...((((....))))..))))..(((((((((....))))......................((((((...(((.(((........))).)))...)))))).))))))). ( -27.30) >DroEre_CAF1 127650 120 - 1 AACCAUAGAUAAGCGGUCAUUUGCAUUUUGAGUGGCUUCAUAUAAAUGAUAAGCAUUAAUUUCUUUAUUUUCGAAUCCGGAGAGAGAGGAAAUGAUUUGUCAAAUGACUCGCAGCCAGGA ............(((((((((((((..((.....(((((((....))))..)))....((((((((.((((((....))))))..))))))))))..)).)))))))).)))........ ( -31.30) >DroYak_CAF1 132136 120 - 1 AACUAUAGAUAAGCAGUUAUUUGCAUUUUGAGUGGCUUCAUAAAAAUGAUAAACAUUAAUUUCUUUAUUUUCGAAUCCGGAGAGAGAGGAAAUGAUUUGUCAAAUGACUCGCAGCCAGGA ............(((((((((((((..((.((((...((((....))))....)))).((((((((.((((((....))))))..))))))))))..)).))))))))).))........ ( -27.30) >consensus AACCAUAGAUAAGCAGUCAUUUGCAUUUUGAGUGGCUUCAUAAAAAUGAUAAACAUUAAUUUCUUUAUUUUCGAGUCCGGAGAGAGAGGAAAUGAUUUGUCAAAUGACUCGCAGCCAGGA ............(((((((((((((..((.((((...((((....))))....)))).((((((((.((((((....))))))..))))))))))..)).))))))))).))........ (-24.68 = -25.20 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:17 2006