Locus 4607

Sequence ID 3L_DroMel_CAF1
Location 13,142,954 – 13,143,074
Length 120
Max. P 0.973028
window7225

overview

Window 5

Location 13,142,954 – 13,143,074
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.25
Mean single sequence MFE -30.18
Consensus MFE -24.80
Energy contribution -24.68
Covariance contribution -0.12
Combinations/Pair 1.29
Mean z-score -2.09
Structure conservation index 0.82
SVM decision value 1.70
SVM RNA-class probability 0.973028
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13142954 120 + 23771897
CUCUUUGGAGAUAUUUUCUAGUUUGUUUGGGCUUGGUAAAUUCUAUUAGGGGUCAUAUGAAACCUGUUUUAGUUACUUUACCCACGGUUAUCUGCUAAUAGCGUAUUUUCCGUUGAACUU
(((....))).........(((((....(((...(((((.......((((..((....))..))))......)))))...)))((((..((.(((.....))).))...)))).))))). ( -26.42)
>DroSec_CAF1 130635 120 + 1
ACCAGGGGAGAUAUUUUCUACUUUGUUUGGGCUUGGUAAAUUAUAUUAGGGGUCAUAUGAAACCUGUUUUAGUUACUUUACCCACGGUUAUCUGCUAUUAGCGUAUUUUCCGUUGGACUU
.(((((((((((((.............((((...(((((.(((...((((..((....))..))))...))))))))...))))..((((........))))))))))))).)))).... ( -31.60)
>DroSim_CAF1 130536 120 + 1
ACCAGGGGAGAUAUUUUCUAGUUUGUUUGGGCUUGGUAAAUUCUAUUAGGGGUCAUAUGAAACCUGUUUUAGUUACUUUACCCACGGUUAUCUGCUAUUAGCUUAUUUUCCGUUGGACUU
.((((((((((((....(((((..((...((((.((((((..(((.((((..((....))..))))...)))....))))))...))))....)).)))))..)))))))).)))).... ( -31.00)
>DroEre_CAF1 127492 118 + 1
CUUAGCGGAGA--UUUUCUAGUUUGUUUGGGCUUAGUAAAUUCUAUUAGGGGUAAUAUAAAACCUGUUUUAGUUACUUUACCCACGGCUAUCUGCCAUUAGAGUAUUUUCCGUUGGACUC
.((((((((((--..(((((((.....((((...(((((...(((..(.((((........)))).)..))))))))...)))).(((.....))))))))))...)))))))))).... ( -36.70)
>DroYak_CAF1 131976 120 + 1
CUUAGCGGAGAUAUUUUCCACUUUGUUUGUGCUGAGUAAAUUCUAUUAGGGGUCAUAUAAAACCUGUUUUAGUUACUUUACCCACGGCUAUCUGUUAUUAGUGUAUUUUCCGUUGGACUU
.((((((((((................((((..((((((...(((..(.((((........)))).)..)))))))))....))))((((........))))....)))))))))).... ( -25.20)
>consensus
CUCAGCGGAGAUAUUUUCUAGUUUGUUUGGGCUUGGUAAAUUCUAUUAGGGGUCAUAUGAAACCUGUUUUAGUUACUUUACCCACGGUUAUCUGCUAUUAGCGUAUUUUCCGUUGGACUU
.((((((((((................((((...(((((.......((((..((....))..))))......)))))...)))).(((.....)))..........)))))))))).... (-24.80 = -24.68 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:16 2006