Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,141,355 – 13,141,475 |
Length | 120 |
Max. P | 0.721894 |
Location | 13,141,355 – 13,141,475 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.67 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -23.68 |
Energy contribution | -23.32 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.33 |
Structure conservation index | 0.88 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13141355 120 + 23771897 CAGGCGAUUGCCAACAAUUCAGUCGCAUUAUUUAUUCAUUUCAAUGCUGUUGACGCUGGUUUAAUAGCUUGUUAAAUAUUUAGUUCGCGUUUACACAAAAUGCGACAAAAAGCCGGACAA ..((((((((....)))))..((((((((................(((((((((....).))))))))(((((((((...........))))).)))))))))))).....)))...... ( -26.60) >DroSec_CAF1 129020 120 + 1 CAGGCAAUUGCCAACAAUUCAGUCGCAUUAUUUAUUCAUUUUAAUGCUGUUGACGCUGGUUUAAUAGGUUGUUAAAUAUUUAAUUUGCGUUUACACAAAAUGCGACAAAAAGCCGGACAA ..((((((((....)))))..((((((((..(((.......)))((.(((.(((((..(((.((((..(....)..)))).)))..))))).))))).)))))))).....)))...... ( -27.80) >DroSim_CAF1 128960 120 + 1 CAGGCAAUUGCCAACAAUUCAGUCGCAUUAUUUAUUCAUUUCAAUGCUGUUGACGCUGGUUUAAUAGCUUGUUAAAUAUUUAGUUCGCGUUUACACAAAAUGCGACAAAAAGCCGGACAA ..(((....))).........(((((((((..((((.....(((.(((((((((....).)))))))))))...))))..))))((((((((.....))))))))......))..))).. ( -26.50) >DroEre_CAF1 125867 120 + 1 CAGGCAAUUGCCAACAAUUCAGACGCAUUAUUUAUUCAUUCCGAUGCUGUUGACGUUGGUUUAAUAGCUUGUUUAAUAUUUAGUUCGCGUUUACACAAAAUGCGACAAAAAGCCGGACAA (((((.(((((((((...((((..(((((.............)))))..)))).))))))..))).)))))...........((.(((((((.....))))))))).............. ( -26.22) >DroYak_CAF1 130311 120 + 1 GAGGCAAUUGCCAACAAUUCAGUCGCAUUAUUUAUUCAUUCCGAUGCUGUUGACGUUGGUUUAAUAGCUUGUUUAAUAUUUAGUUCGCGUUUACACAAAAUGCGACAAAAAGCCGGACAA ..(((....((((((...((((..(((((.............)))))..)))).))))))......................((.(((((((.....))))))))).....)))...... ( -27.12) >consensus CAGGCAAUUGCCAACAAUUCAGUCGCAUUAUUUAUUCAUUUCAAUGCUGUUGACGCUGGUUUAAUAGCUUGUUAAAUAUUUAGUUCGCGUUUACACAAAAUGCGACAAAAAGCCGGACAA ..((((((((....)))))..((((((((.......(((....))).(((.(((((..(((.((((..........)))).)))..))))).)))...)))))))).....)))...... (-23.68 = -23.32 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:10 2006