Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,139,965 – 13,140,085 |
Length | 120 |
Max. P | 0.812834 |
Location | 13,139,965 – 13,140,085 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -32.15 |
Consensus MFE | -28.26 |
Energy contribution | -28.96 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.88 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13139965 120 + 23771897 UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUGUAUGCUGAUGCCGCCAAAACUCCGACACCGAUGAUUCUGUGGGUGGCAGCACUGGGAAAAAUUGUUUACUUCGCAUUCAAAAC ((((((((......)))))))).((((.((((((((....)))))(((((((..........(((.((....)).))))))))))..))).))))......................... ( -28.40) >DroSec_CAF1 127678 120 + 1 UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUUUAUGCUGACGCCGCCAAAACUCCGACACCGAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUUUUGAUUUUGCAUUCAAAAC ((((((((......)))))))).(((((((((((((....))))).((((((..........(((.((....)).)))))))))...))))))))....((((((........)))))). ( -34.40) >DroSim_CAF1 127603 120 + 1 UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUUUAUGCUGACGCCGCCAAAACUCCGACACCGAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUGUUGAUUUCGCAUUCAAAAC ((((((((......)))))))).(((((((((((((....))))).((((((..........(((.((....)).)))))))))...))))))))......((((........))))... ( -32.90) >DroEre_CAF1 124582 120 + 1 UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUUUAUGCUGACGCCGCCAAAACUCCGACAGCAAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUCUUGAUUUUGCAUUUAAGGC ((((((((......)))))))).(((((((((((((....))))).((.((((.....((.((((........)))).)))))).))))))))))....((((((........)))))). ( -36.10) >DroYak_CAF1 129008 120 + 1 UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCACUUUAUGCUGACGCCGCCAAAACUCCGACACCAAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUGUUGCUUUUGCAUUCAAAGC ((((((((......)))))))).((((((((((((.....).))).((((((...((..................)).))))))...))))))))...(((.(((....)))..)))... ( -28.97) >consensus UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUUUAUGCUGACGCCGCCAAAACUCCGACACCGAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUGUUGAUUUUGCAUUCAAAAC ((((((((......)))))))).(((((((((((((....))))).((((((...((.....((....)).....)).))))))...))))))))......................... (-28.26 = -28.96 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:08 2006