| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,138,558 – 13,138,670 |
| Length | 112 |
| Max. P | 0.559862 |
| Location | 13,138,558 – 13,138,670 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.68 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -22.00 |
| Energy contribution | -22.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13138558 112 + 23771897 CACCCCGAUCCCCCUCAUCAACGGCCAGCAAACGGACGCAUGCCAAUCGAGUGAAGCUUUCAUCCGUUUUCCGUUUGCUAUUCACUCGGCCC-CCAAAAAAGAACAAAA-------AAAA ......................((((((((((((((........((.((..(((.....)))..)).))))))))))))........)))).-................-------.... ( -22.00) >DroEre_CAF1 123189 110 + 1 CACCCCGAUCC-CCUCAUCAACGGCCAGCAAACGGACGCAUGCCAAUCGAGUGAAGUUUUCAUCCGUUUUCCGUUUGCUAUUCACUCGGCCCCCCGAAAAAGAGCA---------AAAAA ...........-.(((......((..((((((((((........((.((..(((.....)))..)).))))))))))))..))..((((....))))....)))..---------..... ( -23.20) >DroYak_CAF1 127542 120 + 1 CACCCCGACCCCCCUCAUCAACGGCCAGCAAACGGACGCAUGCCAAUCGAGUGAAGUUUUCAUCCGUUUUCCGUUUGCUAUUCACUCGGCCCCCCAAAAAAGAGCAGAAAAAAAUAAAAA .............(((......(((..((........))..)))..(((((((((.....((..((.....))..))...)))))))))............)))................ ( -22.10) >consensus CACCCCGAUCCCCCUCAUCAACGGCCAGCAAACGGACGCAUGCCAAUCGAGUGAAGUUUUCAUCCGUUUUCCGUUUGCUAUUCACUCGGCCCCCCAAAAAAGAGCA_AA______AAAAA ......................((((((((((((((........((.((..(((.....)))..)).))))))))))))........))))............................. (-22.00 = -22.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:03 2006