| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 174,194 – 174,431 |
| Length | 237 |
| Max. P | 0.916813 |
| Location | 174,194 – 174,314 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.00 |
| Mean single sequence MFE | -41.84 |
| Consensus MFE | -40.00 |
| Energy contribution | -38.90 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.916813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 174194 120 + 23771897 CUGGAUGGAGGAGAGGAUUUGUGGUUGUUGCAGUUGUCGGUGUAGUGGUUGGCUUGUUUUGAACUCGUGGAGCUCGAAGCUCAAAACUUCUUCGCCGAUCCCUUAGCGAUUGCAGAUUCU .............((((((((..(((((((.((..(((((((.((.((((.....(((((((.(((...))).)))))))....)))).)).)))))))..)))))))))..)))))))) ( -44.50) >DroSec_CAF1 7900 120 + 1 CUGGAUGGAGAAGAGGAUUUGUGGUUGUUGCAGUUGUUGGCGUAGUGGAUGACUUGUUUUGAACUCGUGGAGCUCGAAGCUCAAAACUUCUUCGCCGGUCCCUUAGCGAUUGCAGAUUCU .............((((((((..(((((((.((..(..((((.(((...(((...(((((((.(((...))).))))))))))..)))....))))..)..)))))))))..)))))))) ( -38.40) >DroYak_CAF1 8109 120 + 1 CUGGAUGGAGAAGAGGAUUUGUGGUUGUUGCAGUUGUUGGCGUAGUGGAUGGCUUGUUUUGACCUCGUGGGGUUCGAAGCUCAAAACUUCUUCGCCGAUCCCUUAGCGAUUGCAGAUUCU .............((((((((..(((((((.((..(((((((.((.((.......((((((((((....))).)))))))......)).)).)))))))..)))))))))..)))))))) ( -42.62) >consensus CUGGAUGGAGAAGAGGAUUUGUGGUUGUUGCAGUUGUUGGCGUAGUGGAUGGCUUGUUUUGAACUCGUGGAGCUCGAAGCUCAAAACUUCUUCGCCGAUCCCUUAGCGAUUGCAGAUUCU .............((((((((..(((((((.((..(((((((.(((...(((...(((((((.(((...))).))))))))))..)))....)))))))..)))))))))..)))))))) (-40.00 = -38.90 + -1.10)
| Location | 174,314 – 174,431 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 94.30 |
| Mean single sequence MFE | -35.00 |
| Consensus MFE | -30.66 |
| Energy contribution | -30.33 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.88 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 174314 117 + 23771897 CCACACCAGGUCCUGCCAUGUCGUCAAACUCGUUGUUGAACUCAAAGGGAGUUCCGACCAAAUUAUUGACUAUAUGAGUAUUGCUCCCGUAAUCUGACAUUGGCGGUGGCAGUACCA ........(((.(((((((..((((((((((((((..((((((.....))))))))))(((....))).......))))(((((....)))))......))))))))))))).))). ( -36.30) >DroSec_CAF1 8020 117 + 1 CCACACCAGGUCCUGCCAUGUCGUCAAACUCGUUGUUGAAUUCAAAUGGAGUUCCGACCAAGUUAUUGACUAUAUGAGUAUUGCUCCCGUAAUCUGACAUUGGCGGAGGCAGUACCA ........(((.(((((..........((((....(((....)))...))))((((.((((((((..((.(((..(((.....)))..))).)))))).))))))))))))).))). ( -34.70) >DroYak_CAF1 8229 117 + 1 CCACACCUGGUCCUGCCAUGUCAUCAAACUCAUUGUUGAACUCAAAGGGAGUACCGACCAAGUUGUUGACUAUAUGAGUAUUGCUCCCGUAAUCUGACAUCGGCGGUGGCAGUACCA ........(((.((((((((((.((((.(.....))))).......(((((((.((((......))))(((.....)))..))))))).............))).))))))).))). ( -34.00) >consensus CCACACCAGGUCCUGCCAUGUCGUCAAACUCGUUGUUGAACUCAAAGGGAGUUCCGACCAAGUUAUUGACUAUAUGAGUAUUGCUCCCGUAAUCUGACAUUGGCGGUGGCAGUACCA .........((((((((((((((....((((((.(((((((((.....))))).))))(((....))).....))))))(((((....))))).)))))).))))).)))....... (-30.66 = -30.33 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:49 2006