Locus 4599

Sequence ID 3L_DroMel_CAF1
Location 13,138,361 – 13,138,463
Length 102
Max. P 0.599076
window7211

overview

Window 1

Location 13,138,361 – 13,138,463
Length 102
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 97.08
Mean single sequence MFE -21.58
Consensus MFE -20.84
Energy contribution -21.24
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.11
Structure conservation index 0.97
SVM decision value 0.13
SVM RNA-class probability 0.599076
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13138361 102 - 23771897
GGACAUGGGCGAUGACAACAUCAAUGUCAGCAC--ACAGCAAACGCUCGUCUCCUCCAUUAUAUUUUCUUCUCUGGCUCAUUUCGUCCUGCUUGAACACAAAAA
(((.(((((((.(((((.......)))))((..--...))...))))))).))).................((.(((............))).))......... ( -21.90)
>DroSec_CAF1 126103 102 - 1
GGACAUGGGCGAUGACAACAUCAAUGUCAGCAC--ACUGCAAACGCUCGUCUCCUCCAUUAUAUUUUCUUCUCUGGCUCAUUUCGUCCUGCUUGAACACAAAAA
(((.(((((((.(((((.......)))))((..--...))...))))))).))).................((.(((............))).))......... ( -22.20)
>DroSim_CAF1 126058 102 - 1
GGACAUGGGCGAUGACAACAUCAAUGUCAGCGC--ACAGCAAACGCUCGUUUCCUCCAUUAUAUUUUCUUCUCUGGCUCAUUUCGUCCUGCUUGAACACAAAAA
(((.(((((((.(((((.......)))))((..--...))...))))))).))).................((.(((............))).))......... ( -22.60)
>DroEre_CAF1 122989 104 - 1
GGACAUGGGCGAUGACAACAUCAAUGUCAGCACACACAGCAAACGCUCGGCUCCUCCAUUAUAUUUUCUUCUCUGGCUCAUUUCGUCCUGCUUGAACACAAAAA
((((((((((((((....))))((((..(((......(((....)))..)))....))))...............))))))...))))................ ( -19.70)
>DroYak_CAF1 127331 102 - 1
GGACAUGGGCGAUGACAACAUCAAUGUCAGCAC--ACAGCAAACGCUCGGCUCCUCCAUUAUAUUUUCUUCUCUGGCUCAUUUUGUCCUGCUUGAACACAAAAA
((((((((((((((....))))((((..(((..--..(((....)))..)))....))))...............)))))...)))))................ ( -21.50)
>consensus
GGACAUGGGCGAUGACAACAUCAAUGUCAGCAC__ACAGCAAACGCUCGUCUCCUCCAUUAUAUUUUCUUCUCUGGCUCAUUUCGUCCUGCUUGAACACAAAAA
(((.(((((((.(((((.......)))))((.......))...))))))).))).................((.(((............))).))......... (-20.84 = -21.24 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:02 2006