Locus 4596

Sequence ID 3L_DroMel_CAF1
Location 13,136,829 – 13,136,949
Length 120
Max. P 0.961635
window7200

overview

Window 0

Location 13,136,829 – 13,136,949
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.91
Mean single sequence MFE -30.24
Consensus MFE -28.46
Energy contribution -28.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.94
SVM decision value 1.53
SVM RNA-class probability 0.961635
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13136829 120 + 23771897
CGCCCGUAAAUCCUCCUCCAUGGAGGCAAAUUUGUCAGCAAUUGAAAUUCACCAAACAUUUUGAAUUUGUUUGCCUGGCUACACUUUGGACGGGUUCUCGUUCGCUGGUUUUUAGGUUUU
.(((.(((...(((((.....))))).......((((((((...(((((((..........)))))))..))).))))))))(((.(((((((....)))))))..))).....)))... ( -29.60)
>DroSec_CAF1 124595 114 + 1
CGCCCGUAAAUCCUCCUCCAUGGAGGCAAAUUUGUCAGCAAUUGAAAUUCACCAAACAUUUUGAAUUUGUUUGCCUGGCUACACUUUGGACGGGUUCUCGUUCGCUGGUUUUUA------
.((((((....(((((.....)))))((((...((((((((...(((((((..........)))))))..))).))))).....)))).))))))...................------ ( -29.50)
>DroSim_CAF1 124509 114 + 1
CGCCCGUAAAUCCUCCUCCAUGGAGGCAAAUUUGUCAGCAAUUGAAAUUCACCAAACAUUUUGAAUUUGUUUGCCUGGCUACACUUUGGACGGGUUCUCGUUCGCUGGUUUUUA------
.((((((....(((((.....)))))((((...((((((((...(((((((..........)))))))..))).))))).....)))).))))))...................------ ( -29.50)
>DroEre_CAF1 121424 114 + 1
CGCCCGUAAGUCCUCCUCCAUGGAGGCAAAUUUGUCAGCAAUUGAAAUUCACCAAACAUUUUGAAUUUGUUUGCCUGGCUACACUUUGGACGGGUUCUCGUUCGCUGGUUUUCA------
.((((((..(.(((((.....))))))......((((((((...(((((((..........)))))))..))).)))))..........))))))...................------ ( -29.60)
>DroYak_CAF1 125742 114 + 1
CGCCAGUAAAUCCUCCUCCAUGGAGGCAAAUUUGUCAGCAAUUGAAAUUCACCAAACAUUUUGAAUUUGUUUGCCUGGCUACACUUUGGACGGGUUCUCGUUCGCUGGUUUUUA------
.((((((....(((((.....))))).......((((((((...(((((((..........)))))))..))).)))))........((((((....)))))))))))).....------ ( -33.00)
>consensus
CGCCCGUAAAUCCUCCUCCAUGGAGGCAAAUUUGUCAGCAAUUGAAAUUCACCAAACAUUUUGAAUUUGUUUGCCUGGCUACACUUUGGACGGGUUCUCGUUCGCUGGUUUUUA______
.(((.(((...(((((.....))))).......((((((((...(((((((..........)))))))..))).)))))))).....((((((....))))))...)))........... (-28.46 = -28.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:52 2006