Locus 4595

Sequence ID 3L_DroMel_CAF1
Location 13,136,292 – 13,136,409
Length 117
Max. P 0.743749
window7199

overview

Window 9

Location 13,136,292 – 13,136,409
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.67
Mean single sequence MFE -29.41
Consensus MFE -25.09
Energy contribution -25.69
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.85
SVM decision value 0.46
SVM RNA-class probability 0.743749
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13136292 117 + 23771897
ACUAUAACUUGUGCUCCAUUUGGCCCUUGGUCCAUUUAGAAUUCUAA---AAUUCCUUAUCUGCUUAGAUUAAAAUCCUGGCCGCAAGUGGUACCAUCAUCCUGGGCUGGAUCCAUGAAA
........(..((....(((..((((.((((((((((.(((((....---))))).......(((..(((....)))..)))...)))))).)))).......))))..))).))..).. ( -27.00)
>DroSec_CAF1 124050 120 + 1
ACUAUAACUUGUGCUCCAUUUGGCCCUUGGUCCAUUUAGAAUUCUAAGCAAUUUCCUUAUCUGCUUAGAUUAAAAUCCUGGCCGCAAGUGGUACCAUCAUCCUGGGCUGGAUCCAUGAAA
........(..((....(((..((((.((((((((((.....((((((((...........))))))))..........(....))))))).)))).......))))..))).))..).. ( -28.70)
>DroSim_CAF1 123964 120 + 1
ACUAUAACUUGUGCUCCAUUUGGCCCUUGGUCCAUUUAGAAUUCUAAGCAAUUUCCUUAUCUGCUUAGAUUAAAAUCCUGGCCGCAAGUGGUACCAUCAUCCCGGGCUGGAUCCAUGAAA
........(..((....(((..((((..((((..........((((((((...........))))))))..........))))....(((....)))......))))..))).))..).. ( -28.45)
>DroEre_CAF1 120906 120 + 1
GCUAUAACUUGUGCUCCAUUUGGCCCUUGGUCCAUUUGGAAUUCUAAGCAAUUUGCUUAUCUGCUUAGAUUAAAACGCUGGCCGCAAGUGGUACCAUCAUCCAGGGCUGGAUCCAUGAAA
........(..((....(((..((((((((((((((((....((((((((...........))))))))......((.....))))))))).))))......)))))..))).))..).. ( -34.00)
>DroYak_CAF1 125162 120 + 1
ACUAUAACUUGUGCUCCAUUUGGCCCUUGGUCCAUUUAGAAUUCUAAGCAAUUUCCUUAUCUGCUUAGAUUAAAAUCCUGGCCGCAAGUGGUAUCCUCAUCCAGGGCUGGAUCCAUGAAA
........(..((....(((..(((((.((............((((((((...........))))))))...........((((....))))........)))))))..))).))..).. ( -28.90)
>consensus
ACUAUAACUUGUGCUCCAUUUGGCCCUUGGUCCAUUUAGAAUUCUAAGCAAUUUCCUUAUCUGCUUAGAUUAAAAUCCUGGCCGCAAGUGGUACCAUCAUCCAGGGCUGGAUCCAUGAAA
........(..((....(((..((((..((((..........((((((((...........))))))))..........))))......((.........)).))))..))).))..).. (-25.09 = -25.69 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:50 2006