| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,135,737 – 13,135,854 |
| Length | 117 |
| Max. P | 0.696748 |
| Location | 13,135,737 – 13,135,854 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.55 |
| Mean single sequence MFE | -29.92 |
| Consensus MFE | -6.18 |
| Energy contribution | -9.38 |
| Covariance contribution | 3.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.21 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13135737 117 + 23771897 CUUCGGCUAAAACUGCACUUGAACAGGUGGCGGUCACAAGCUGAUGGAUUAAGCCUUUU-UUUU-UUGUAGCUUGAGUUACUUACAUGGCCACUUACUU-UUGGCCAAAAGAAGGUAAAA ..((((((...(((((((((....)))).)))))....))))))........(((((((-((..-..(((((....))))).....((((((.......-.))))))))))))))).... ( -37.10) >DroSec_CAF1 123517 109 + 1 CUUUGGCUAAAACUGCACUUGAACAGGUGGCGGUCACAAGCUGAUGAAUUAAGCCAUUU-UUUUGGUGUAGUUUGAGGUACUUACAUGGCCACUUACUUGUUGGCCAA----------AA .....(((.((((((((((.(((.(((((((..((((.....).))).....)))))))-))).))))))))))..))).......(((((((......).)))))).----------.. ( -34.30) >DroSim_CAF1 123401 118 + 1 CUUUGGCUAAAACUGCACUUGAACAGGUGGCGGUCACAAGCUGAUGGAUUAAGCCAUUU-UUUUGGUGUAGUUUGAGUUACUUACAUAGCCACUUACUU-UUGCCCAAAAGAAGGUGAAA ...((((((((((((((((.(((.(((((((.(((.((......)))))...)))))))-))).))))))))))..((.....)).)))))).((((((-((........)))))))).. ( -36.10) >DroEre_CAF1 120434 94 + 1 CCCCGGCUAAAACUGCACUUGCACACG--------------UGAUGGAUUAAGCAAUGC-UUUU-UUGUAGACUGCGUUA---------CCAAUUACUU-UUGGCCAGAAGAUGGUGAAA ....((((((((.(((....)))...(--------------((((((.....(((.(((-....-..)))...)))....---------)).)))))))-)))))).............. ( -21.30) >DroYak_CAF1 124618 107 + 1 CGUCGACUAAAACUGCACUUGCACAGGCGGCGGGCACAAACUGAUGGAUUAAACAAUGAGUUUU-UUGUAGACUUACUUA-----------ACUUACUU-UAAGCCACAAGAUGGUGAAA (((((.((.....(((....)))..)))))))..(((...((..(((.(((((...((((((..-..(((....)))..)-----------))))).))-))).)))..))...)))... ( -20.80) >consensus CUUCGGCUAAAACUGCACUUGAACAGGUGGCGGUCACAAGCUGAUGGAUUAAGCCAUUU_UUUU_UUGUAGAUUGAGUUACUUACAU_GCCACUUACUU_UUGGCCAAAAGAAGGUGAAA ....((((((..((((((((....)))).))))...(((((((..(((.............)))....))))))).........................)))))).............. ( -6.18 = -9.38 + 3.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:49 2006