Locus 4592

Sequence ID 3L_DroMel_CAF1
Location 13,134,343 – 13,134,463
Length 120
Max. P 0.634776
window7195

overview

Window 5

Location 13,134,343 – 13,134,463
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.33
Mean single sequence MFE -23.76
Consensus MFE -21.72
Energy contribution -22.32
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.91
SVM decision value 0.21
SVM RNA-class probability 0.634776
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13134343 120 - 23771897
AUAAGCAAUUUAAUUUGUCAAUCGUCUCUCUCUUGGCACACAAUCAACAAAAUCCAUCAGACCUCUCUUAACUUGUCCUUCAACGGGCGGCAAUUAAACGGCACCAGAGGCAUCUGGACA
....((..(((((((.(((....(((........))).....................................((((......))))))))))))))..)).(((((....)))))... ( -24.60)
>DroSec_CAF1 122154 120 - 1
AUAAGCAAUUUAAUUUGUCAAUCGUCUCUCUCUUGGCACACAAUCAACAAAAUCCAUCAGCCCUCUCUUAACUUGUCCUUCAACGGGCGGCAAUUAAACGGCACCAGAGGCAUCUGGACA
....((..(((((((.(((....(((........)))......................((((.....................))))))))))))))..)).(((((....)))))... ( -25.60)
>DroSim_CAF1 120409 120 - 1
AUAAGCAAUUUAAUUUGUCAAUCGUCUCUCUCUUGGCACACAAUCAACAAAAUCCAUCAGCCCUCUCUUAACUUGUCCUUCAACGGGCGGCAAUUAAACGGCACCAGAGGCAUCUGGACA
....((..(((((((.(((....(((........)))......................((((.....................))))))))))))))..)).(((((....)))))... ( -25.60)
>DroEre_CAF1 119098 120 - 1
AUAAGCAAUUUAAUUUGUCAAUCGUCUCUCUCUUGGCACACAAUCAACAAAAUCCAUCAGCCCUCUCUUAACUUGUCCUUCAUCGGGCGGCAAUUAAACGGCUCCAGAGGCAAAUGGACA
....((..(((((((.(((....(((........)))......................((((.....................))))))))))))))..))((((........)))).. ( -21.50)
>DroYak_CAF1 123199 120 - 1
AUAAGCAAUUUAAUUUGUCAAUCGUCUCUCUCUUGCCACACAAUCAACAAAAUCCAUCAGCCUUCUCUUAACUUGUCCUUCAUCGGGCGGCAAUUAAACGGCUCCAGAGGCAUCUGGACA
....((..(((((((.(((....((..(......)..))...................................((((......))))))))))))))..))((((((....)))))).. ( -21.50)
>consensus
AUAAGCAAUUUAAUUUGUCAAUCGUCUCUCUCUUGGCACACAAUCAACAAAAUCCAUCAGCCCUCUCUUAACUUGUCCUUCAACGGGCGGCAAUUAAACGGCACCAGAGGCAUCUGGACA
....((..(((((((.(((....(((........))).....................................((((......))))))))))))))..)).(((((....)))))... (-21.72 = -22.32 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:46 2006