Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,134,127 – 13,134,232 |
Length | 105 |
Max. P | 0.637562 |
Location | 13,134,127 – 13,134,232 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.15 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -24.42 |
Energy contribution | -24.54 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.53 |
Structure conservation index | 0.80 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13134127 105 - 23771897 AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCACAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUAGG---------------ACCACAUGGCAAAGUCAGAGCAGUGACUCGCU ..(((((((((((...((((.(((.......))).))))..))))....((((((((((.(.((....)).).---------------))))))))))......)).)))))........ ( -30.30) >DroSec_CAF1 121949 99 - 1 AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGG----------------GCCACAUGGCAAAGUCAGA-----GACUCGCU .....((.(((((...((((.((((.....)))).))))..)))))...((((((((((...((....))..----------------))))))))))..((((...-----)))).)). ( -32.00) >DroSim_CAF1 120204 99 - 1 AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGG----------------GCCACAUGGCAAAGUCAGA-----GACUCGCU .....((.(((((...((((.((((.....)))).))))..)))))...((((((((((...((....))..----------------))))))))))..((((...-----)))).)). ( -32.00) >DroEre_CAF1 118888 106 - 1 AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGGG---------CACAUGGCCACAUGGGAAAGUCAGA-----GACUCGCC ....(((((((((...((((.((((.....)))).))))..))))....(((.((.....))..)))...)))---------))((((....))))((..((((...-----))))..)) ( -28.40) >DroYak_CAF1 122973 115 - 1 AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGGGGCCCACGGCCACAUUGCUACAUGGAAAAGUUAGA-----GACUCGCU .....((.(((((...((((.((((.....)))).))))..)))))....(((((((((((.((....)).)((((...))))....))))))))))..........-----.....)). ( -30.00) >consensus AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGGG_______________GCCACAUGGCAAAGUCAGA_____GACUCGCU .....((.(((((...((((.((((.....)))).))))..)))))...((((((((((...((....))..................))))))))))..((((........)))).)). (-24.42 = -24.54 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:45 2006