Locus 4589

Sequence ID 3L_DroMel_CAF1
Location 13,132,172 – 13,132,290
Length 118
Max. P 0.861658
window7191

overview

Window 1

Location 13,132,172 – 13,132,290
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.41
Mean single sequence MFE -31.08
Consensus MFE -24.70
Energy contribution -26.14
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.79
SVM decision value 0.83
SVM RNA-class probability 0.861658
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13132172 118 - 23771897
ACAUAUAUCCCUUGGAGGGCAGAAUACAAGUUACCUCCCAACUGCCAUUCACAAAUAUCAUAAAUCCAGUGAGCAACUACUCAGUUGCCGUUGCCUUUGGGGGCAAUGUGGCAA-CUAC-
.............(((((...............)))))....(((((.((((................))))((((((....))))))((((((((....))))))))))))).-....- ( -32.55)
>DroSec_CAF1 120026 104 - 1
----AUAUCCCUUGGAGGGCAGAAUACAAGUUACCUCCCAA----------CAAAUAUCAUAAAUCCAGUGAGCAACUACUCAGUUGCCGUUGCCUUUGGGGGCAAUGUGGCAA-CUAC-
----.........(((((...............)))))...----------...................(((......)))((((((((((((((....)))))))..)))))-))..- ( -28.66)
>DroSim_CAF1 118322 114 - 1
----AUAUCCCUUGGAGGGCAGAAUACAAGUUACCUCCCAACUGCCAUUCACAAAUAUCAUAAAUCCAGUGAGCAACUACUCAGUUGCCGUUGCCUUUGGGGGCAAUGUGGCAA-CUAC-
----.........(((((...............)))))....(((((.((((................))))((((((....))))))((((((((....))))))))))))).-....- ( -32.55)
>DroEre_CAF1 117137 114 - 1
----AUAUCCCUUGGAGG-CCGAAUACAAGUUACCUCCCAGCUGCCAUUCACAAAUAUCAUAAAUCCUGGGAGUAACUACUCAGUUGCCGAUGCCUUUGGGGGCAAUGUGGCAA-CUACU
----..........(((.-..(....).((((((.((((((.........................)))))))))))).)))((((((((.(((((....)))))...))))))-))... ( -33.61)
>DroYak_CAF1 121044 115 - 1
----AUAUCCCUUGGAGGGCAGAAUACAAGUUACCUCCCAACUGCCAUUCACAAAUAUCAUAAAUCCAGGGAGCAACUACUCAGUUGGCGAUGCCUUUGGGGGCAAUGUGGCAAACUAC-
----...(((((.(((.(((((...................)))))..................)))))))).(((((....)))))(((.(((((....))))).)))..........- ( -28.02)
>consensus
____AUAUCCCUUGGAGGGCAGAAUACAAGUUACCUCCCAACUGCCAUUCACAAAUAUCAUAAAUCCAGUGAGCAACUACUCAGUUGCCGUUGCCUUUGGGGGCAAUGUGGCAA_CUAC_
.............(((((....(((....))).)))))....(((((.........................((((((....))))))((((((((....)))))))))))))....... (-24.70 = -26.14 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:42 2006