Locus 4588

Sequence ID 3L_DroMel_CAF1
Location 13,131,877 – 13,131,992
Length 115
Max. P 0.634643
window7190

overview

Window 0

Location 13,131,877 – 13,131,992
Length 115
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 90.94
Mean single sequence MFE -28.12
Consensus MFE -24.21
Energy contribution -24.90
Covariance contribution 0.69
Combinations/Pair 1.07
Mean z-score -1.47
Structure conservation index 0.86
SVM decision value 0.21
SVM RNA-class probability 0.634643
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13131877 115 - 23771897
CCAUACUCACACACACACACACACACUUUAACACACAGGAUGCGUCUGCCAUUGUUUUUUAUUUCACCAUCCAGAAAAUGGGACAUGGGAAUACGGGUGGACCGUUUUGUGAUUA
.................................(((((((((.(((..((.....(((((((.((.((((.......)))))).)))))))....))..)))))))))))).... ( -29.50)
>DroSec_CAF1 119733 113 - 1
CCAUACUCACACACAC--ACACACACUCUAGCACACAGGAUGCGCCUGCCAUUGUUUUUUAUUUCCCCAUCCAGAAAAUGGGACAAGGGAAUACGGGUGGACCGUUUUGUGAUUA
................--...............(((((((((.(.(..((..((((((((.....(((((.......)))))...))))))))..))..).)))))))))).... ( -24.60)
>DroSim_CAF1 118029 113 - 1
CCAUACUAACACACAC--ACAUACACUCUAACACACAGGAUGCGUCUGCCAUUGUUUUUUAUUUCCCCAUCCAGAAAAUGGGACAAGGGAAUACGGGUGGACCGUUUUGUGAUUA
................--...............(((((((((.(((..((..((((((((.....(((((.......)))))...))))))))..))..)))))))))))).... ( -29.60)
>DroEre_CAF1 116829 108 - 1
CCAUACACACACAC------ACACACUCCAACACACAGGAUGCGUCUGCCAUUGUUUUUUAUUUCCCCAUCCAGCAAAUGGGACAGGGGAAUG-GGAGGGACCGUUUUGUGAUUA
..............------.............(((((((((.((((........((((((((((((..(((........)))..))))))))-))))))))))))))))).... ( -28.80)
>consensus
CCAUACUCACACACAC__ACACACACUCUAACACACAGGAUGCGUCUGCCAUUGUUUUUUAUUUCCCCAUCCAGAAAAUGGGACAAGGGAAUACGGGUGGACCGUUUUGUGAUUA
.................................(((((((((.(((((((..((((((((...((.((((.......))))))..))))))))..)))))))))))))))).... (-24.21 = -24.90 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:41 2006