Locus 4587

Sequence ID 3L_DroMel_CAF1
Location 13,130,973 – 13,131,093
Length 120
Max. P 0.789483
window7189

overview

Window 9

Location 13,130,973 – 13,131,093
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -23.80
Consensus MFE -22.62
Energy contribution -22.66
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.34
Structure conservation index 0.95
SVM decision value 0.58
SVM RNA-class probability 0.789483
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13130973 120 + 23771897
AGGUAAGCCAAAUCCAAACAAGUGAAACUAUUUACCUUGGAGAAAAAGCGAUAACAAACCCGCAAACAAACAAAGUUUCCAGCGCUUGGGAGCCAAAGUAAUUAACAUAAGGGCAGCCAG
.(((..(((...(((((....(((((....))))).)))))......(((..........)))...........((((((((...))))))))..................))).))).. ( -22.70)
>DroSec_CAF1 118812 120 + 1
AGGUAAGCCAAAUCCAAACAAGUGAAACUAUUUACCUUGGAGAAAAAGCGAUAACAAACCCGCAAACAAACAAAGUUUCCAGCGCUUGGGAGCCAAAGUAAUUAACAUAAGGGCAGCCAG
.(((..(((...(((((....(((((....))))).)))))......(((..........)))...........((((((((...))))))))..................))).))).. ( -22.70)
>DroSim_CAF1 117105 120 + 1
AGGUAAGCCAAAUCCAAACAAGUGAAACUAUUUAACUUGGAGAAAAAGCGAUAACAAACCCGCAAACAAACAAAGUUUCCAGCGCUUGGGAGCCAAAGUAAUUAACAUAAGGGCAGCCAG
.(((..(((...(((((..(((((....)))))...)))))......(((..........)))...........((((((((...))))))))..................))).))).. ( -21.70)
>DroEre_CAF1 115805 120 + 1
AGGUAAGCCAAAUCCAAACAAGUGAAACUAUUUACCUUGGAGGAAAAGCGAUAACAAGCCCGCAAACAAACAAAGUUCCCAGCGCUUGGGAGCCAAAGUAAUUAACAUAAGGGCAGCCAG
.(((..((....(((...((((((((....)))).))))..)))...))........((((.............((((((((...))))))))....((.....))....)))).))).. ( -29.20)
>DroYak_CAF1 119372 120 + 1
AGGUAAGCCAAAUCCAAACAAGUGAAACUAUUUACCUUGGAGAAAAAGCGAUAACAAACCCGCAAACAAACAAAGUUUCCAGCGCUUGGGAGCCGAAGUAAUUAACAUAAGGGCAGCCAG
.(((..(((...(((((....(((((....))))).)))))......(((..........)))...........((((((((...))))))))..................))).))).. ( -22.70)
>consensus
AGGUAAGCCAAAUCCAAACAAGUGAAACUAUUUACCUUGGAGAAAAAGCGAUAACAAACCCGCAAACAAACAAAGUUUCCAGCGCUUGGGAGCCAAAGUAAUUAACAUAAGGGCAGCCAG
.(((..(((...(((((....(((((....))))).)))))......(((..........)))...........((((((((...))))))))..................))).))).. (-22.62 = -22.66 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:40 2006