Locus 4586

Sequence ID 3L_DroMel_CAF1
Location 13,129,140 – 13,129,260
Length 120
Max. P 0.995302
window7188

overview

Window 8

Location 13,129,140 – 13,129,260
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.62
Mean single sequence MFE -34.06
Consensus MFE -31.70
Energy contribution -31.74
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.93
SVM decision value 2.56
SVM RNA-class probability 0.995302
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13129140 120 + 23771897
GGGGGGACAACAACCUACUCCGCUGACAGAACGACGUUUUAUGGAAAUUUUCAUCUGUUCGCCCGCAAGCGGUGCCCAUAUGCAUUCCAUUCCGUAAAUCCGCAUCUGUUGUCAGCCACA
.((((............))))((((((((...((.(((((((((((.....(((.((..(((((....).))))..)).))).......)))))))))...)).))..)))))))).... ( -36.00)
>DroSec_CAF1 116968 117 + 1
G---GGACAACAACCUACUCCGCUGACAGAACGACGUUUUAUGGAAAUUUUCAUCUGUUCGCCCGCAAGCGGUGCCCAUAUGCAUGCCAUUCCGUAAAUCCGCAUCUGUUGUCAGCCACA
(---(........))......((((((((...((.(((((((((((.....(((.((..(((((....).))))..)).))).......)))))))))...)).))..)))))))).... ( -33.00)
>DroSim_CAF1 115228 117 + 1
G---GGACAACAACCUACUCCGCUGACAGAACGACGUUUUAUGGAAAUUUUCAUCUGUUCGCCCGCAAGCGGUGCCCAUAUGCAUGCCAUUCCGUAAAUCCGCAUCUGUUGUCAGCCACA
(---(........))......((((((((...((.(((((((((((.....(((.((..(((((....).))))..)).))).......)))))))))...)).))..)))))))).... ( -33.00)
>DroEre_CAF1 113968 117 + 1
G---GGACAACAACCUUCUCCGCUGACAGAACGACGUUUUAUGGAAAUUUUCAUCUGCUUGCCCGCAAGCGGUGCCCAUAUGCAUUCCAUUCCGUAAAUCCGCAUCUGUUGUCAGCCACA
(---(........))......((((((((...((.(((((((((((........(((((((....)))))))(((......))).....)))))))))...)).))..)))))))).... ( -34.20)
>DroYak_CAF1 117437 117 + 1
G---GGACAACAACCUUCGCCGCUGACAGAACGACGUUUUAUGGAAAUUUUCAUCUGUUCGCCCGCAAGCGGUGCCCAUAUGCAUUCCGUUCCGUAAAUCCGCAUCUGUUGUCAGCCACA
(---(........))......((((((((...((.(((((((((((.....(((.((..(((((....).))))..)).))).......)))))))))...)).))..)))))))).... ( -34.10)
>consensus
G___GGACAACAACCUACUCCGCUGACAGAACGACGUUUUAUGGAAAUUUUCAUCUGUUCGCCCGCAAGCGGUGCCCAUAUGCAUUCCAUUCCGUAAAUCCGCAUCUGUUGUCAGCCACA
....(((...........)))((((((((...((.(((((((((((.....(((.((..(((((....).))))..)).))).......)))))))))...)).))..)))))))).... (-31.70 = -31.74 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:39 2006