Locus 4584

Sequence ID 3L_DroMel_CAF1
Location 13,127,993 – 13,128,107
Length 114
Max. P 0.834384
window7180

overview

Window 0

Location 13,127,993 – 13,128,107
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.13
Mean single sequence MFE -30.90
Consensus MFE -24.50
Energy contribution -25.14
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.82
Structure conservation index 0.79
SVM decision value 0.73
SVM RNA-class probability 0.834384
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13127993 114 - 23771897
UAAAGGUGCCGCCCAAAGAGUUAUCGCUCAAUCCUGUCCAGGCAUGGGCAUCAU------AUGUGCAACUCCCGGCACAGUUCACUUAACAAAUGCUCAACUAUGGCGCCCCAUCAGAAA
....(((((((((((..((((....))))...(((....)))..))))).....------.(((((........))))).........................)))))).......... ( -33.20)
>DroSec_CAF1 115835 114 - 1
UAAAGGUGCCGCCCAAAGAGUUAUCGCUCAAUCCUGUCCAGGCACGGGCAUCAU------AUGUGCAACUCCCGGCACAGUUCACUUAACAAAUGCUCAACUAUGGCGCCCCAUCAGAAA
....((((((((((...((((....))))...(((....)))...)))).....------.(((((........))))).........................)))))).......... ( -32.50)
>DroSim_CAF1 114113 114 - 1
UAAAGGUGCCGCCAAAGGAGUUAUCGCUCAAUCCUGUCCAGGCAUGGGCAUCAU------AUGUGCAACUCCCGGCACAGUUCACUUAACAAAUGCUCAACUAUGGCGCCCCAUCAGAAA
....(((((((((..((((............)))).....))).(((((((...------.(((((........)))))(((.....)))..))))))).....)))))).......... ( -33.40)
>DroEre_CAF1 112826 120 - 1
UAGAGGUGCCGCCCAAAGAGUUAUCGCUCAAUCCUGUCCAGGCACUGGCACCAUACGUCUAUGUGCAGCUCCCGGCACAGUUCACUUAACAAAUGCUCAACUAUGGCGCCCCAUCAGAAA
..(.(((((((......((((....))))....((((((.((..(((.(((.(((....)))))))))..)).)).)))).......................))))))).)........ ( -30.50)
>DroYak_CAF1 116274 114 - 1
UAAAGGUGCCGCCCAAAGAGUUAUCGCUUAAUCCCGUCCAAGCAUUGGCAUCAU------AUGCACAACUCACGGCACAGUUCACUUAACAAAUGCUCAACUAUGGCGCCCCAUCAGAAA
....(((((((((....(((((...((((..........))))....((((...------))))..)))))..)))...(((.....)))..............)))))).......... ( -24.90)
>consensus
UAAAGGUGCCGCCCAAAGAGUUAUCGCUCAAUCCUGUCCAGGCAUGGGCAUCAU______AUGUGCAACUCCCGGCACAGUUCACUUAACAAAUGCUCAACUAUGGCGCCCCAUCAGAAA
....(((((((((....(((((...((((...(((....)))...))))..(((......)))...)))))..)))...(((.....)))..............)))))).......... (-24.50 = -25.14 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:31 2006