Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,126,925 – 13,127,045 |
Length | 120 |
Max. P | 0.553395 |
Location | 13,126,925 – 13,127,045 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -27.15 |
Consensus MFE | -22.00 |
Energy contribution | -21.80 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.51 |
Structure conservation index | 0.81 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13126925 120 - 23771897 UUAGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCAGAGCUGCGCGAGAAAAUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUCCCAUCG ...(((.(.(((((((((........))).......)))))).))))(((((.........(((((((..((.....))..)))))))..((.....))..........)))))...... ( -24.71) >DroSec_CAF1 114771 120 - 1 UCGGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGAGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUGCCAUCG ..((((...(((((((((........))))(((((((((.......)))))))))......(((((((..((.....))..)))))))................)))))...)))).... ( -29.00) >DroSim_CAF1 113015 120 - 1 UCGGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGCGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUGCCAUCG ..((((...(((((((((........))))(((((((((.......)))))))))......(((((((..((.....))..)))))))................)))))...)))).... ( -29.00) >DroEre_CAF1 111719 120 - 1 UCGGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGCGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUCCCGUUG .(((.((..(((((((((........))))(((((((((.......)))))))))......(((((((..((.....))..)))))))................)))))...)))))... ( -26.90) >DroYak_CAF1 115067 120 - 1 UCAGCUAACGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGCGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUCCCAUUU .(((((......((((((........)))))).......)))))...((((..........(((((((..((.....))..)))))))..((.....)).............)))).... ( -26.12) >consensus UCGGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGCGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUCCCAUCG .((((.......((((((........))))))........)))).((((((....))))..(((((((..((.....))..)))))))...................))........... (-22.00 = -21.80 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:30 2006