Locus 4582

Sequence ID 3L_DroMel_CAF1
Location 13,126,646 – 13,126,766
Length 120
Max. P 0.976158
window7178

overview

Window 8

Location 13,126,646 – 13,126,766
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.30
Mean single sequence MFE -21.06
Consensus MFE -19.40
Energy contribution -19.44
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.65
Structure conservation index 0.92
SVM decision value 1.76
SVM RNA-class probability 0.976158
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13126646 120 + 23771897
UUUUUUACGAGUUUCACGAUGCAAACCGCGAAUAAUUUCUUUUCCGUUUUUUAGCCGUUUGCGUGUUUGUUGGAUGCUUUCAUAAUAAACAUACUAAAUUCUAUUUAAUUUUCCACUCUU
........((((........((((((.((........................)).))))))((((((((((((.....)).))))))))))......................)))).. ( -20.96)
>DroSec_CAF1 114497 118 + 1
--UUUUACGAGUUUCAUGAUGCAAACCGCGAAUAAUUUCUUUUCCGUUUUUUAGUCGUUUGCGUGUUUGUUGGAUGCUUUCAUAAUAAACAUACUAAAUUCUAUUUAAUUUUCCACUCUU
--......((((........((((((.((........................)).))))))((((((((((((.....)).))))))))))......................)))).. ( -19.36)
>DroSim_CAF1 112739 118 + 1
--UUUUACGAGUUUCACGAUGCAAACCGCGAAUAAUUUCUUUUCCGUUUUUUAGCCGUUUGCGUGUUUGUUGGAUGCUUUCAUAAUAAACAUACUAAAUUCUAUUUAAUUUUCCACUCUU
--......((((........((((((.((........................)).))))))((((((((((((.....)).))))))))))......................)))).. ( -20.96)
>DroEre_CAF1 111449 118 + 1
--UUUUGCGCGUUUCGCGAUGCAAACCGCGAAUAAUUUCUUUUCCGUUUUUUAGCUGUUUGCGUGUUUGUUGGAUGCUUUCAUAAUAAACAUACUAAAUUCUAUUUAAUUUUCCUCUCUU
--.....((((...))))..((((((.((........................)).))))))((((((((((((.....)).))))))))))............................ ( -21.26)
>DroYak_CAF1 114792 118 + 1
--UUUUACGAGUUUCGCGAUGCAAACCGCGAAUAAUUUCUUUUCCGUUUUUUAGCCGUUUGCGUGUUUGUUGGAUGCUUUCAUAAUAAACAUACUAAAUUCUAUUUAAUUUUCCUCGCUU
--.............((((.((((((.((........................)).))))))((((((((((((.....)).))))))))))......................)))).. ( -22.76)
>consensus
__UUUUACGAGUUUCACGAUGCAAACCGCGAAUAAUUUCUUUUCCGUUUUUUAGCCGUUUGCGUGUUUGUUGGAUGCUUUCAUAAUAAACAUACUAAAUUCUAUUUAAUUUUCCACUCUU
........((((((......((((((.((........................)).))))))((((((((((((.....)).))))))))))...))))))................... (-19.40 = -19.44 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:29 2006