Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,125,859 – 13,125,979 |
Length | 120 |
Max. P | 0.738426 |
Location | 13,125,859 – 13,125,979 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.25 |
Mean single sequence MFE | -21.79 |
Consensus MFE | -19.60 |
Energy contribution | -20.00 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.90 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13125859 120 - 23771897 GCCACGACGAGAGUGAAAAACAAAACAACAUGUCAAAAAUAAAUGUACAAAAGACAUUUCUGGUAUAUUUUCCAAAUGAAAUAUUAGUUUACUUUUAGCGACGCCAGCGAGGCAGUCAAA (((.((..(((((((((...............(((.....((((((((...(((....))).))))))))......)))........)))))))))..)).((....)).)))....... ( -22.30) >DroSec_CAF1 113716 117 - 1 GCCA---CGAGAGUGAAAAACAAAACAACAUGUCAAAAAUAAAUGUACAAAAGACAUUUCUGGUAUAUUUUCCAAAUGAAAUAUUAGUUUACUUUUAGCGACGCCAGCGAGGCAGUCAAA ((((---(....))).......((((......(((.....((((((((...(((....))).))))))))......))).......)))).......))((((((.....))).)))... ( -22.62) >DroSim_CAF1 111952 120 - 1 GCCAAGACGAGAGUGAAAAACAAAACAACAUGUCAAAAAUAAAUGUACAAAAGACAUUUCUGGUAUAUUUUCCAAAUGAAAUAUUAGUUUACUUUUAGCGACGCCAGCGAGGCAGUCAAA .....(..(((((((((...............(((.....((((((((...(((....))).))))))))......)))........)))))))))..)((((((.....))).)))... ( -21.50) >DroEre_CAF1 110689 120 - 1 GCCAAGACGAGAGUGAAAAACAAAACAACAUGUCAAAAAUAAAUGUACAAAAGACAUUUCUGGUAUACUUUUCAAAUGAAAUAUUAGUUUACUUUUAGCGACGCCAGCGAGGCAGUCAAA .....(..(((((((((............(((((..................)))))..(((((((....(((....)))))))))))))))))))..)((((((.....))).)))... ( -20.67) >DroYak_CAF1 114012 120 - 1 GCCAGGACGAGAGUGAAAAACAAAACAACAUGUCAAAAAUAAAUGUACAAAAGACAUUUCUGGUAUACUUUUCAAAUGAAAUAUUAGUUUACUUUUAGCGACGCCAGCGCGGCAGUCAAA (((.....(((((((((............(((((..................)))))..(((((((....(((....))))))))))))))))))).(((.(....)))))))....... ( -21.87) >consensus GCCAAGACGAGAGUGAAAAACAAAACAACAUGUCAAAAAUAAAUGUACAAAAGACAUUUCUGGUAUAUUUUCCAAAUGAAAUAUUAGUUUACUUUUAGCGACGCCAGCGAGGCAGUCAAA ........(((((((((...............(((.....((((((((...(((....))).))))))))......)))........)))))))))...((((((.....))).)))... (-19.60 = -20.00 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:28 2006