Locus 4573

Sequence ID 3L_DroMel_CAF1
Location 13,121,029 – 13,121,142
Length 113
Max. P 0.844599
window7151

overview

Window 1

Location 13,121,029 – 13,121,142
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.13
Mean single sequence MFE -36.12
Consensus MFE -28.54
Energy contribution -29.54
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.79
SVM decision value 0.76
SVM RNA-class probability 0.844599
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13121029 113 + 23771897
UAUGCAUUUAACUUC-------GUCUGUGCGUGUGUCUUGGCGCGCUUUUAAUUUGCCAAAGCUCAUAAUUAAUAGCCAGGCUAGACCGCAGGCCCUAAUUGGCCAAGACAAUGGCCGGA
...............-------(((((((.((.((.((((((......((((((.((....))....))))))..)))))).)).))))))))).....(((((((......))))))). ( -34.30)
>DroSec_CAF1 108968 113 + 1
UAUGCAUUUAACUUC-------GUCUGUGCGUGUGUCUUGGCGCGCUUUUAAUUUGCCAAAGCUCAUAAUUAAUAGCCAGGCUAGACCGCAGGCCCUAAUUGGCCAAGACAAUGGCCGGA
...............-------(((((((.((.((.((((((......((((((.((....))....))))))..)))))).)).))))))))).....(((((((......))))))). ( -34.30)
>DroSim_CAF1 107112 113 + 1
UAUGCAUUUAACUUC-------GUCUGUGCGUGUGUCUUGGCGCGCUUUUAAUUUGCCAAAGCUCAUAAUUAAUAGCCAGGCUAGACCGCAGGCCCUAAUUGGCCAAGACAAUGGCCGGA
...............-------(((((((.((.((.((((((......((((((.((....))....))))))..)))))).)).))))))))).....(((((((......))))))). ( -34.30)
>DroEre_CAF1 105671 120 + 1
UAUGCAUUAAACUUUGGCUCUUGUGUGUGCGUGUGUCUGGCCGCGCUUUUAAUUUGCCAAAGCUCAUAAUUAAUAGCCAGGCUAGACCGCAGGCCCUAAUUGGCCAAGACAAUGGCCCGA
...............((((.((((.(....(((.((((((((..(((.((((((.((....))....)))))).)))..))))))))))).((((......)))).).)))).))))... ( -42.40)
>DroYak_CAF1 109143 113 + 1
UAUGCAUUAAACUAC-------GUCUGUGCUUGUGUCUUGCCGCGCUUUUAAUUUGCCAAAGCUCAUAAUUAAUAGCCAGGCUAGACCGCUGGCCCUAAUUGGCCAAGACAAUGGCCGGA
...............-------.((((.(((..((((((((((.(((.((((((.((....))....)))))).)))).((((((....))))))......)).)))))))..))))))) ( -35.30)
>consensus
UAUGCAUUUAACUUC_______GUCUGUGCGUGUGUCUUGGCGCGCUUUUAAUUUGCCAAAGCUCAUAAUUAAUAGCCAGGCUAGACCGCAGGCCCUAAUUGGCCAAGACAAUGGCCGGA
.......................((((.((...((((((((((.(((.((((((.((....))....)))))).)))).((((........)))).......)))))))))...)))))) (-28.54 = -29.54 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:02 2006