Locus 4571

Sequence ID 3L_DroMel_CAF1
Location 13,120,631 – 13,120,741
Length 110
Max. P 0.664928
window7147

overview

Window 7

Location 13,120,631 – 13,120,741
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.62
Mean single sequence MFE -35.64
Consensus MFE -20.93
Energy contribution -22.19
Covariance contribution 1.25
Combinations/Pair 1.11
Mean z-score -2.00
Structure conservation index 0.59
SVM decision value 0.28
SVM RNA-class probability 0.664928
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13120631 110 + 23771897
CAUCUGGUGGUGGUUCUGCGUACCCCCCCAAA---AACCAACUCCUUAUCGAUGGGGUAUGGGC---UAUAGCGUGUGGCCUAUACG----CCAGGACCCAACCCUUAAAUAGCCGCCAG
...(((((((((((((((((((...(((((..---.................)))))..(((((---(((.....))))))))))))----.))))))).............)))))))) ( -40.92)
>DroSec_CAF1 108578 109 + 1
CAUCUGGUGGUGGUCCUGCGAACC--CCCAAA---AACCAACUCCUUAUCGAUGGGGUAUGGUGCGGUAUAG------GCGUAUAGGCCACCCAGGACCCAACCCUUAAAUAGCCGCCAG
...(((((((((((((((.(....--.((...---.(((((((((........))))).))))..))....(------((......))).).))))))).............)))))))) ( -40.11)
>DroSim_CAF1 106725 106 + 1
CAUCUGGUGGUGGUCCUGCGAACC--CCCAAA---AACCAACUCCUUAUCGAUGGGGUAUGGUG---UAUAG------GCGUAUAGGCCACCCAGAACCCAACCCUUAAAUAGCCGCCAG
...(((((((((((.(((.(....--......---.(((((((((........))))).)))).---....(------((......))).).))).))).............)))))))) ( -32.21)
>DroYak_CAF1 108720 107 + 1
CAUCUGGUGGGAGGCUUGCGAACC--CCAAUAGCU--CGAACUCCUUAUAGAUGGAAUAUAUAGC-AUAUAG-------CGUAUAGCCCA-UCAGGACCCAACCCUUAAAUAGCCGCCAG
...(((((((((((....(((.(.--......).)--))....))))...(((((..(((((.((-.....)-------))))))..)))-))(((.......))).......))))))) ( -29.30)
>consensus
CAUCUGGUGGUGGUCCUGCGAACC__CCCAAA___AACCAACUCCUUAUCGAUGGGGUAUGGUG___UAUAG______GCGUAUAGGCCA_CCAGGACCCAACCCUUAAAUAGCCGCCAG
...(((((((((((((((...................((((((((........))))).))).....((((..........)))).......))))))).............)))))))) (-20.93 = -22.19 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:58 2006