Locus 4569

Sequence ID 3L_DroMel_CAF1
Location 13,119,810 – 13,119,930
Length 120
Max. P 0.960696
window7143

overview

Window 3

Location 13,119,810 – 13,119,930
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -30.39
Consensus MFE -24.10
Energy contribution -24.90
Covariance contribution 0.80
Combinations/Pair 1.12
Mean z-score -2.25
Structure conservation index 0.79
SVM decision value 1.52
SVM RNA-class probability 0.960696
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13119810 120 - 23771897
UCGAACCGCCACACCAAUCAGCGGUCGAUCCACGGCUGAACAUGAAAAUUAAAAGCUUCAGUUGUGUAGGGCGCCCCUUUAAAUUAGCGCUCUCCACUAAAACACUGAAUUAAAACCCAA
((((.((((...........)))))))).....((((....((....))....))))(((((.(((.(((((((............))))))).)))......)))))............ ( -29.50)
>DroSec_CAF1 107716 120 - 1
UCGAACCGCCACACCAAUCAGCGGUCGAUCCACGGCUGAACAUGGAAAUUAAAAGCUCCAGUUGUGUGUGGCGCCCCUUUAAAUUAGCGCUCUGCACUAAAACACUGAAUUAAAACCCAA
......((((((((((((((((.((......)).)))))...((((..........)))).))).))))))))..........((((.((...)).)))).................... ( -30.90)
>DroSim_CAF1 105870 120 - 1
UCGAACCGCCACACCAAUCAGCGGUCGAUCCACGACUGAACAUGGAAAUUAAAAGCUCCAGUUGUGUGGUGCGCCCCUUUAAAUUAGCGCUCUGCACUAAAACACUGAAUUAAAACCCAA
.................((((((((((.....))))))(((.((((..........)))))))(((..(.((((............)))).)..))).......))))............ ( -27.90)
>DroEre_CAF1 104540 119 - 1
UCGAACCGCCACACCAAUCAGCGGUCGAUCCACCGCUGAACAUGGAAAUUAAAAGCUCCAGUUCUGUGGGGCGCC-CUUUAAAUUGGCGCUCUGCACUAAAACUCUAAAUUAAAACCCAA
..((((...........((((((((......))))))))...((((..........))))))))((..(((((((-.........)))))))..))........................ ( -36.10)
>DroYak_CAF1 107849 120 - 1
UCGAACCACCACGUCAAUCAACGGUCGAUCCGGUGCUGAACAUGGAAAUUAAAAGAUCCAGUUCUGUGGAGCGCCCCUUUAAAUUAGCGCUCUGCACUAAAACUCUGAAUUAAAACCCAA
((((.((...............))))))...(((((.((((.((((..........))))))))...(((((((............))))))))))))...................... ( -27.56)
>consensus
UCGAACCGCCACACCAAUCAGCGGUCGAUCCACGGCUGAACAUGGAAAUUAAAAGCUCCAGUUGUGUGGGGCGCCCCUUUAAAUUAGCGCUCUGCACUAAAACACUGAAUUAAAACCCAA
((((.((((...........))))))))..........(((.((((..........)))))))(((((((((((............)))))))))))....................... (-24.10 = -24.90 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:55 2006