Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,118,567 – 13,118,678 |
Length | 111 |
Max. P | 0.999732 |
Location | 13,118,567 – 13,118,678 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.02 |
Mean single sequence MFE | -38.08 |
Consensus MFE | -33.56 |
Energy contribution | -33.76 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.77 |
Structure conservation index | 0.88 |
SVM decision value | 3.97 |
SVM RNA-class probability | 0.999732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13118567 111 - 23771897 GGGUCU----G-----GUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCCGGGGAAGGGGCUACGACCCAACAAAACUACAAAUAGAU (((((.----.-----((((((.((((((......((.....))(((((.(((........))).)))))....))))))((......)))))))))))))................... ( -37.00) >DroSec_CAF1 106414 111 - 1 GGGUCU----G-----GUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCCGGGGAAGGGGCUACGACCCAACAAAACUACAAAUAGAU (((((.----.-----((((((.((((((......((.....))(((((.(((........))).)))))....))))))((......)))))))))))))................... ( -37.00) >DroSim_CAF1 104535 111 - 1 GGGUCU----G-----GUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCCGGGGAAGGGGCUACGACCCAACAAAACUACAAAUAGAU (((((.----.-----((((((.((((((......((.....))(((((.(((........))).)))))....))))))((......)))))))))))))................... ( -37.00) >DroEre_CAF1 102918 119 - 1 GGGUCUGGCUGCUCUGGUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCAC-GAAAGGGGCUACGACCCAACAAAACUACAAAUAGAU (((((.(...(((((..(.(.((((((((......((.....))(((((.(((........))).)))))....)))))))))-.)..)))))..))))))................... ( -42.00) >DroYak_CAF1 106605 115 - 1 GGGUCUGUCUGC-----UGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCUCCAAAAGGGGCUACGACCCAACAAAACUACAAAUAGAU (((((.((((..-----(((..(((((((......((.....))(((((.(((........))).)))))....))))))).)))....))))...)))))................... ( -37.40) >consensus GGGUCU____G_____GUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCCGGGGAAGGGGCUACGACCCAACAAAACUACAAAUAGAU (((((...........(((((((((((((......((.....))(((((.(((........))).)))))....))))))).........)))))))))))................... (-33.56 = -33.76 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:50 2006