Locus 4565

Sequence ID 3L_DroMel_CAF1
Location 13,116,624 – 13,116,730
Length 106
Max. P 0.657017
window7132

overview

Window 2

Location 13,116,624 – 13,116,730
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.76
Mean single sequence MFE -36.20
Consensus MFE -28.41
Energy contribution -27.89
Covariance contribution -0.52
Combinations/Pair 1.14
Mean z-score -1.56
Structure conservation index 0.78
SVM decision value 0.26
SVM RNA-class probability 0.657017
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13116624 106 + 23771897
AUUACGCUGACAUUGAACG--------------CUGAACGCUGAAGGGAGAUGCCACUGAAGUGGGGGCGAAGUGCCCGGGUAACGGCGUCAGUCAGAGAGCAAUUGAAGCGAUUUAUUG
....((((...((((..(.--------------((((((((((..........((((....))))((((.....))))......))))))...)))).)..))))...))))........ ( -34.60)
>DroSec_CAF1 104490 106 + 1
AUUACGCUGACAUUGAACG--------------CUGAACGUUGAAGGGAGCUGCCAUUGAAGUGGGGGCGAAGUGCCCGGGUAACGGCGUCAGUCAGAGAGCAAUUGAAGCGAUUUAUUG
....((((...((((...(--------------((((.(((((..(((.(((.((((....)))).)))......)))...)))))...))))).......))))...))))........ ( -33.20)
>DroSim_CAF1 102582 106 + 1
AUUACGCUGACAUUGAACG--------------CUGAACGCUGAAGGGAGCUGCCAUUGAAGUGGGGGCGAAGUGCCCGGGUAACGGCGUCAGUCAGAGAGCAAUUGAAGCGAUUUAUUG
....((((...((((..(.--------------((((((((((..(((.(((.((((....)))).)))......)))......))))))...)))).)..))))...))))........ ( -34.40)
>DroEre_CAF1 101023 112 + 1
AUUACGCUGACAUUGAACGC-------UGAGCGCUGAGCGCUGAAGGGAGCUGCCACUGAAGUGG-GGCAAAGUGCCCGGGUAACGGCGUCAGUCAGAGAGCAAUUGAAGCGAUUUAUUG
....((((...((((..(.(-------(((((((((..((((..((((.....)).))..))))(-(((.....))))......))))))...)))).)..))))...))))........ ( -37.80)
>DroYak_CAF1 104562 119 + 1
AUUACGCUGACAUUGAAUGCUGAACACUGAACGCUGAACGCUGAAGGGAGCUGCCACUGAAGUGG-GGCAAAGUGCCCGGGUAACGGCGUCAGUCAGAGAGCAAUUGAAGCGAUUUAUUG
....((((...((((....((((...((((.(((((..((((..((((.....)).))..))))(-(((.....))))......)))))))))))))....))))...))))........ ( -41.00)
>consensus
AUUACGCUGACAUUGAACG______________CUGAACGCUGAAGGGAGCUGCCACUGAAGUGGGGGCGAAGUGCCCGGGUAACGGCGUCAGUCAGAGAGCAAUUGAAGCGAUUUAUUG
....((((...((((..(...............((((((((((..(((.(((.((((....)))).)))......)))......))))))...)))).)..))))...))))........ (-28.41 = -27.89 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:44 2006