Locus 4564

Sequence ID 3L_DroMel_CAF1
Location 13,116,433 – 13,116,551
Length 118
Max. P 0.754336
window7131

overview

Window 1

Location 13,116,433 – 13,116,551
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.82
Mean single sequence MFE -32.62
Consensus MFE -23.79
Energy contribution -24.27
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -2.01
Structure conservation index 0.73
SVM decision value 0.48
SVM RNA-class probability 0.754336
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13116433 118 - 23771897
CACAUCCUCAGUUUGGCACCAGAAUGUGUCUGAGCUCCAUUGGAGCGUGAGUAAUCCUUUCAAUUUGAACAGCUCA--CACACCAGACACACGGCACACACACACACAGGUGAAUAAUUG
........(((((...((((....((((((((.(((((...)))))((((((......(((.....)))..)))))--)....)))))))).(.....).........))))...))))) ( -34.70)
>DroSec_CAF1 104301 116 - 1
CACAUCCUCAGUUUGGCACCAGAAUGUGUCUGAGCUCCAUUGGAGCGUGAGUAAUCCUUUCAAUUUGAACAGCUCA--CACACCCGAAACACGACACAC--ACACACAGGUGAAUAAUUG
........(((((...((((.(..(((((.((.(((((...)))))((((((......(((.....)))..)))))--)...............)).))--)))..).))))...))))) ( -29.30)
>DroSim_CAF1 102392 116 - 1
CACAUCCUCAGUGUGGCACCAGAAUGUGUCUGAGCUCCAUUGGAGCGUGAGUAAUCCUUUCAAUUUGAACAGCUCA--CACACCAGACACACGGCACAC--ACACACAGGUGAAUAAUUG
..((.(((..((((((..((....((((((((.(((((...)))))((((((......(((.....)))..)))))--)....)))))))).))..).)--))))..)))))........ ( -37.80)
>DroEre_CAF1 100843 109 - 1
---AUCCCCGGUUUUGUAGCAGAAUGUGUCUGAGCUCCAUUGGAGCGUGAGUAAUCCCUUCAAUUUAAGCAGCUCC--CGCAGCAGACACACGGCACA------CACAGGUGAAUAAUUG
---.((.((.((..(((.((....((((((((.(((..(((((((.(.((....))))))))))...))).((...--.))..))))))))..)))))------.)).)).))....... ( -31.40)
>DroYak_CAF1 104369 114 - 1
GCAAUCCUCAGUUUGGCACCAGAAUGUGUCUGAGCUCCAUUGGAGCGUGAGUAAUCCCUUCAAUUUAAGCAGCUCCCCCACAGCAGACACACGGCACA------CACAGGUGAAUAAUUG
........(((((...((((....(((((((..(((..(((((((.(.((....))))))))))...))).(((.......)))))))))).(.....------)...))))...))))) ( -29.90)
>consensus
CACAUCCUCAGUUUGGCACCAGAAUGUGUCUGAGCUCCAUUGGAGCGUGAGUAAUCCUUUCAAUUUGAACAGCUCA__CACACCAGACACACGGCACAC__ACACACAGGUGAAUAAUUG
........(((((...((((....((((((((.(((((...)))))..((((...................))))........)))))))).(.............).))))...))))) (-23.79 = -24.27 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:43 2006