Locus 4563

Sequence ID 3L_DroMel_CAF1
Location 13,115,470 – 13,115,579
Length 109
Max. P 0.893976
window7130

overview

Window 0

Location 13,115,470 – 13,115,579
Length 109
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 94.88
Mean single sequence MFE -31.10
Consensus MFE -26.36
Energy contribution -27.60
Covariance contribution 1.24
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.85
SVM decision value 0.98
SVM RNA-class probability 0.893976
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13115470 109 - 23771897
AAAUGGCGUUUUGGCCAGCAGCUUCUUUGGGGUGUCAUAUAUCAUUACCCCACAGCCCCCGGGUGCCAAAAA-AGACCAGAAGUAAAGGUUAGUUGCGCCAAUUAGACAC
...((((((.((((((....((((((.(((((((...........)))))))..(((....)))........-.....))))))...))))))..))))))......... ( -34.90)
>DroSec_CAF1 103181 109 - 1
AAAUGCCGUUUUGGCCAGCAGCUUCUUUGGAGUGUCAUAUAUCAUUACCCCACAGCCCCCGGGUGCCAAAAA-AGACCAGAAGUAAAGGUUAGUUGUGCCAAUUAGACAC
.......((((((((((((..(((.(((((((((........))))........(((....))).))))).)-))(((.........)))..)))).)))))...))).. ( -24.30)
>DroSim_CAF1 101264 109 - 1
AAAUGGCGUUUUGGCCAGCAGCUUCUUUGGGGUGUCAUAUAUCAUUACCCCACAGCCCCCGGGUGCCAAAAA-AGACCAGAAGUAAAGGUUAGUUGCGCCAAUUAGACAC
...((((((.((((((....((((((.(((((((...........)))))))..(((....)))........-.....))))))...))))))..))))))......... ( -34.90)
>DroEre_CAF1 99696 106 - 1
AAAUGGCGUUUUCGCCAGCAGCUUCUUUGGGGUGUCAUAUAUCAUUACCCCACAGCCCCCGGGUGCCAAAA---AAACAGAA-UAAAGGUUAGUUGCGCAAACUAGACAC
...(((((....)))))((((((.((((((((((...........))))))...(((....))).......---........-..))))..))))))............. ( -30.70)
>DroYak_CAF1 103173 110 - 1
AAAUGGCGUUUUCGCCAGCAGCUUCUUUGGGGUGUCAUAUAUCAUUACCCCACAGCCCCCGGGUGCCAAAAAAAAAACAGAAGUAAAGGUUAGUUGCGCAAAUUAGACAC
...(((((....)))))((((((.((((((((((...........))))))...(((....))).....................))))..))))))............. ( -30.70)
>consensus
AAAUGGCGUUUUGGCCAGCAGCUUCUUUGGGGUGUCAUAUAUCAUUACCCCACAGCCCCCGGGUGCCAAAAA_AGACCAGAAGUAAAGGUUAGUUGCGCCAAUUAGACAC
...((((((.((((((....((((((.(((((((...........)))))))..(((....)))..............))))))...))))))..))))))......... (-26.36 = -27.60 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:42 2006