Locus 4561

Sequence ID 3L_DroMel_CAF1
Location 13,113,955 – 13,114,047
Length 92
Max. P 0.895390
window7124

overview

Window 4

Location 13,113,955 – 13,114,047
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.58
Mean single sequence MFE -22.77
Consensus MFE -18.30
Energy contribution -18.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.80
SVM decision value 0.99
SVM RNA-class probability 0.895390
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13113955 92 - 23771897
GCCAAAAGUGUGCGGCUAAUGCUGCACCUUAAGUGCAUCCAAC---------------CCCCAA---AAAAA-U------AAAAACCC---GACAGCUUGUCUUAAUGCCUUCGACUUUU
(((..(((.(((((((....))))))))))..).)).......---------------......---.....-.------.......(---((..((..........))..)))...... ( -19.60)
>DroPse_CAF1 98292 110 - 1
GCCGAAAGUGUGCGGCUAAUGCUGCACCUUAAGUGCAGGCAGCACCCGCCUCUCCCGCCUCCCCCCAAGC----------GGAGCCCCACAGACAGCUUGUCUUAAUGCCUUGCACUCUU
.....(((.(((((((....)))))))))).((((((((((((..((((...................))----------)).)).....((((.....))))...)))).))))))... ( -36.81)
>DroSec_CAF1 101612 96 - 1
GCCAAAAGUGUGCGGCUAAUGCUGCACCUUAAGUGCAUCCAAC---------------CCCCCA---AAAAAAGG--AA-AAAACCCC---GACAGCUUGUCUUAAUGCCCUCGACUUUU
...(((((((((((((....)))))))....((.((((.....---------------......---......((--..-......))---(((.....)))...)))).))..)))))) ( -21.40)
>DroSim_CAF1 99354 97 - 1
GCCAAAAGUGUGCGGCUAAUGCUGCACCUUAAGUGCAUCCAAC---------------CCCCCA---AAAAAAGA--AAAAAAACCCC---GACAGCUUGUCUUAAUGCCCUCGACUUUU
(((..(((.(((((((....))))))))))..).)).......---------------......---........--..........(---((..((..........))..)))...... ( -19.60)
>DroEre_CAF1 98228 90 - 1
GCCAAAAGUGUGCGGCUAAUGCUGCACCUUAAGUGCAACCAGC---------------CCCCCC------------AAAAAAAACUCC---GACAGCUUGUCUUAAUGCCCUCGACUUUU
(((..(((.(((((((....))))))))))..).)).......---------------......------------...........(---((..((..........))..)))...... ( -19.60)
>DroYak_CAF1 101629 102 - 1
GCCAAAAGUGUGCGGCUAAUGCUGCACCUUAAGUGCAUCCAAC---------------CUCCCCCCAAAAAAAAGAAAAAAAAACCCC---GACAGCUUGUCUUAAUGCCCUCGACUUUU
(((..(((.(((((((....))))))))))..).)).......---------------.............................(---((..((..........))..)))...... ( -19.60)
>consensus
GCCAAAAGUGUGCGGCUAAUGCUGCACCUUAAGUGCAUCCAAC_______________CCCCCA___AAAAA_____AA_AAAACCCC___GACAGCUUGUCUUAAUGCCCUCGACUUUU
(((..(((.(((((((....))))))))))..).)).......................................................(((.....))).................. (-18.30 = -18.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:36 2006