Locus 4559

Sequence ID 3L_DroMel_CAF1
Location 13,113,461 – 13,113,559
Length 98
Max. P 0.611607
window7121

overview

Window 1

Location 13,113,461 – 13,113,559
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 93.87
Mean single sequence MFE -21.22
Consensus MFE -15.90
Energy contribution -15.74
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.97
Structure conservation index 0.75
SVM decision value 0.16
SVM RNA-class probability 0.611607
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13113461 98 - 23771897
ACCACAAAAGGCCACAACUUGAGCAAUUAUUAAAGUUGAUCCAAGGCGAAACCCAACCCUGCCACGAAAACCCCACCGUUCUACGAAACCCUGUGGCA
.(((((...(((..((((((............)))))).....(((.(........))))))).............((.....))......))))).. ( -16.70)
>DroSec_CAF1 101121 98 - 1
ACCACAAAAGGCCACAACUUGAGCAAUUAUUAAAGUUGAUCCAAGGCGAAGCCCAACCCUGCCACGAAAACCCCACCGUUCUACGAAACCCUGUGGCA
.(((((...(((..((((((............))))))......(((...))).......))).............((.....))......))))).. ( -17.80)
>DroSim_CAF1 98862 98 - 1
ACCACAAAAGGCCACAACUUGAGCAAUUAUUAAAGUUGAUCCAAGGCGAAAGCCAACCCUGCCACGAAAACCCCACCGUUCUACGAAACCCUGUGGCA
.(((((...(((..((((((............))))))......(((....)))......))).............((.....))......))))).. ( -24.00)
>DroEre_CAF1 97752 96 - 1
ACCACAAAAGGCCACAACUUGAGCAAUUAUUAAAGUUGAUCCAAGGCAA-GCCGAACCCUCCCACGAGGG-CCCACUGUUCUACGAAACCCUGUGGCA
.(((((...(((.....((((..(((((.....)))))...))))....-)))(..(((((....)))))-..).................))))).. ( -24.50)
>DroYak_CAF1 101122 97 - 1
ACCACAAAAGGCCACAACUUGAGCAAUUAUUAAAGUUGAUCCAAGGCAAAACCGAACCCUGCCACGAAGG-CCCACCGCUCUACGAAACCCUGUGGCA
.(((((...((((.((((((............))))))......((((...........)))).....))-))...((.....))......))))).. ( -23.10)
>consensus
ACCACAAAAGGCCACAACUUGAGCAAUUAUUAAAGUUGAUCCAAGGCGAAACCCAACCCUGCCACGAAAACCCCACCGUUCUACGAAACCCUGUGGCA
..........((((((.((((..(((((.....)))))...))))...............................((.....))......)))))). (-15.90 = -15.74 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:34 2006