Locus 4553

Sequence ID 3L_DroMel_CAF1
Location 13,098,874 – 13,098,975
Length 101
Max. P 0.992175
window7109

overview

Window 9

Location 13,098,874 – 13,098,975
Length 101
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 90.49
Mean single sequence MFE -17.95
Consensus MFE -16.04
Energy contribution -16.10
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -2.47
Structure conservation index 0.89
SVM decision value 2.31
SVM RNA-class probability 0.992175
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13098874 101 + 23771897
AA----AAAAUAAAUGGGGGAGAAAAG-GUAAAAGAAUUCAAAGAAGAAACAGCGUGACAGAUUAUGCAAACUAAUUACACAAAAUUAGUUGAGAUUUAUGCGCCG--
..----....................(-((.(.(((.(((............((((((....)))))).((((((((......))))))))))).))).)..))).-- ( -14.10)
>DroSec_CAF1 86464 101 + 1
AA----AAAAUAAAUGGGGGAGAAAAG-GUAAAAGAAUUCAAAGAAGAAACAGCGUGACAGAUUAUGCAAACUAAUUACACAAAAUUAGUUGAGAUUUAUGCCCCG--
..----.........((((.(.(((..-........................((((((....)))))).((((((((......))))))))....))).).)))).-- ( -18.60)
>DroSim_CAF1 84202 99 + 1
A------AAAUAAAUGGGGGAGAAAAG-GUAAAAGAAUUCAAAGAAGAAACAGCGUGACAGAUUAUGCAAACUAAUUACACAAAAUUAGUUGAGAUUUAUGCCCCG--
.------........((((.(.(((..-........................((((((....)))))).((((((((......))))))))....))).).)))).-- ( -18.60)
>DroEre_CAF1 82968 105 + 1
AAAUAAAAAAUAAAUGGGGGAGAAAAG-GUAAAAGAAUUCAAAGAAGAAACAGCGUGACAGAUUAUGCAAACUAAUUACACAAAAUUAGUUGAGAUUUAUGCCCCG--
...............((((.(.(((..-........................((((((....)))))).((((((((......))))))))....))).).)))).-- ( -18.60)
>DroYak_CAF1 85893 99 + 1
A------AAAUAAAUGGGGGAGAAAAG-GUAAAAGAAUUCAAAGAAGAAACAGCGUGACAGAUUAUGCAAACUAAUUACACAAAAUUAGUUGAGAUUUAUGCCCCG--
.------........((((.(.(((..-........................((((((....)))))).((((((((......))))))))....))).).)))).-- ( -18.60)
>DroAna_CAF1 79695 99 + 1
AA---------AAAUGGGGGAGAAGUAUAAUAAAGAGUCUCUAGAAGAAACAGCGUGACAGAUUAUGCAAACUAAUUACACAAAAUUAGUUGAGAUUUAUGUCCAACA
..---------...((..(((.(...........(((((((...........((((((....)))))).((((((((......))))))))))))))).).)))..)) ( -19.20)
>consensus
AA_____AAAUAAAUGGGGGAGAAAAG_GUAAAAGAAUUCAAAGAAGAAACAGCGUGACAGAUUAUGCAAACUAAUUACACAAAAUUAGUUGAGAUUUAUGCCCCG__
...............((((.(.(((...........................((((((....)))))).((((((((......))))))))....))).).))))... (-16.04 = -16.10 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:22 2006