Locus 4552

Sequence ID 3L_DroMel_CAF1
Location 13,093,196 – 13,093,287
Length 91
Max. P 0.642575
window7108

overview

Window 8

Location 13,093,196 – 13,093,287
Length 91
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.88
Mean single sequence MFE -28.45
Consensus MFE -20.13
Energy contribution -20.99
Covariance contribution 0.86
Combinations/Pair 1.20
Mean z-score -1.58
Structure conservation index 0.71
SVM decision value 0.23
SVM RNA-class probability 0.642575
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13093196 91 - 23771897
CCACAAUGGUCUUCA-----------AUAUACAUGUGGACCAGUCGGGCUUUCGGUUCGAUAAUUAUUGCCUUCGGGUAGCUGGGGCUUUGA----GGUUCCGAGU
......((((((.((-----------.......)).))))))(((((((.....)))))))......((((....))))(((((((((....----)))))).))) ( -29.60)
>DroPse_CAF1 70782 89 - 1
UUACAAUAGUCUUCA-----------AUA----UUUGGACCAUUCCGGCUUUCGGUUCGAUAAUUAUUGCCCUCG-GCCAC-AGAGCUUCGCUUCUGCUGCUGCUU
...(((((((..(((-----------((.----...((.((.....))))....))).))..)))))))....((-((..(-(((((...)).))))..))))... ( -17.90)
>DroSec_CAF1 80811 91 - 1
CCACAAUGGUCUUCA-----------AUAUACAUGUGGACCAGUCGGGCUUUCGGUUCGAUAAUUAUUGCCUUCGGGUAGCCGGGGCUUUCA----GGUUCCGAGU
......((((((.((-----------.......)).))))))(((((((.....))))))).....(((((....))))).(((((((....----)))))))... ( -31.10)
>DroSim_CAF1 78451 91 - 1
CCACAAUGGUCUUCA-----------AUAUACAUGUGGACCAGUCGGGCUUUCGGUUCGAUAAUUAUUGCCUUCGGGUAGCUGGGGCUUUCA----GGUUCCGAGU
......((((((.((-----------.......)).))))))(((((((.....)))))))......((((....))))(((((((((....----)))))).))) ( -29.60)
>DroEre_CAF1 77408 90 - 1
CCACAAUGGUCUCCA-----------AUAUACAUGUGGACCAUUCGAGCUU-GGGUUCGAUAAUUAUUGCCUUCGGGUAGCUGGGGCUUCGA----GGUUCCGAGU
.....((((((..((-----------.......))..))))))((((((..-..)))))).......((((....))))(((((((((....----)))))).))) ( -30.00)
>DroYak_CAF1 79922 102 - 1
CCACAAUGGUCUACCAUUCCAUAUAUAUGUACAUGUGGACCAGUCGGGCUUUCGGUUCGAUAAUUAUUGCCUUCGGGUAGCUGGGGCUUCAA----UGUUCCGAGU
......((((((((.....(((....))).....))))))))(((((((.....)))))))......((((....))))((((((((.....----.))))).))) ( -32.50)
>consensus
CCACAAUGGUCUUCA___________AUAUACAUGUGGACCAGUCGGGCUUUCGGUUCGAUAAUUAUUGCCUUCGGGUAGCUGGGGCUUCGA____GGUUCCGAGU
......((((((........................))))))(((((((.....))))))).....(((((....))))).(((((((........)))))))... (-20.13 = -20.99 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:21 2006