Locus 4551

Sequence ID 3L_DroMel_CAF1
Location 13,092,365 – 13,092,456
Length 91
Max. P 0.886174
window7106 window7107

overview

Window 6

Location 13,092,365 – 13,092,456
Length 91
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 81.42
Mean single sequence MFE -17.73
Consensus MFE -11.34
Energy contribution -10.90
Covariance contribution -0.44
Combinations/Pair 1.22
Mean z-score -2.18
Structure conservation index 0.64
SVM decision value 0.94
SVM RNA-class probability 0.886174
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13092365 91 + 23771897
UCAAUUCAAUGUGCAUGGAAACACAUGUGUAACUACUACCAUAUAC----AAAUAUAUAUGUAUAAGUGUAUAUAUGGGUACAGCCACCCCUUCA
.........((..((((......))))..)).........((((((----(..((((....))))..)))))))..((((......))))..... ( -18.70)
>DroSec_CAF1 79998 88 + 1
UCAAUUGAAUGUGCAUGGAAACACAUGUGUAACU---ACCACAUAC----AAAUAUAUAUGUAUAAGUGUAUAUACGGGUACAGCCACCCCUUCA
......(.(((((((((....)(((((((((...---.........----...)))))))))....)))))))).)((((......))))..... ( -18.66)
>DroSim_CAF1 77632 88 + 1
UCAAUUGAAUGUGCAUGGAAACACAUGUGUAACU---ACCACAUAC----AAAUAUAUAUGUAUAAAUGUAUAUAUGGGUACAGCCACCCCUUCA
.....((((((((((((....)(((((((((...---.........----...)))))))))....))))))))..((((......))))..))) ( -18.06)
>DroEre_CAF1 76596 78 + 1
UCAACUGAAUGUGCAGGCAAACACAUGUGUAACU---ACUAUAUACAUACA--------------GUAGUAUAUAUAGGUACGGCCACCCCUUCA
...............(((..((..(((((((.((---(((.((....)).)--------------)))))))))))..))...)))......... ( -15.50)
>consensus
UCAAUUGAAUGUGCAUGGAAACACAUGUGUAACU___ACCACAUAC____AAAUAUAUAUGUAUAAGUGUAUAUAUGGGUACAGCCACCCCUUCA
........(((((((((....)..(((((..........)))))......................))))))))..((((......))))..... (-11.34 = -10.90 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 13,092,365 – 13,092,456
Length 91
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 81.42
Mean single sequence MFE -20.93
Consensus MFE -16.08
Energy contribution -15.70
Covariance contribution -0.38
Combinations/Pair 1.13
Mean z-score -1.80
Structure conservation index 0.77
SVM decision value 0.65
SVM RNA-class probability 0.812900
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13092365 91 - 23771897
UGAAGGGGUGGCUGUACCCAUAUAUACACUUAUACAUAUAUAUUU----GUAUAUGGUAGUAGUUACACAUGUGUUUCCAUGCACAUUGAAUUGA
.......(((((((((((...(((((((..((((....))))..)----)))))))))).)))))))..((((((......))))))........ ( -22.90)
>DroSec_CAF1 79998 88 - 1
UGAAGGGGUGGCUGUACCCGUAUAUACACUUAUACAUAUAUAUUU----GUAUGUGGU---AGUUACACAUGUGUUUCCAUGCACAUUCAAUUGA
((((.(((((....)))))(((..(((...((((((........)----)))))..))---)..)))...(((((......)))))))))..... ( -21.00)
>DroSim_CAF1 77632 88 - 1
UGAAGGGGUGGCUGUACCCAUAUAUACAUUUAUACAUAUAUAUUU----GUAUGUGGU---AGUUACACAUGUGUUUCCAUGCACAUUCAAUUGA
((((...(((((((...(((((((((.((.(((....))).)).)----)))))))))---))))))...(((((......)))))))))..... ( -21.50)
>DroEre_CAF1 76596 78 - 1
UGAAGGGGUGGCCGUACCUAUAUAUACUAC--------------UGUAUGUAUAUAGU---AGUUACACAUGUGUUUGCCUGCACAUUCAGUUGA
((((...(((((..(((.(((((((((...--------------.)))))))))..))---))))))...(((((......)))))))))..... ( -18.30)
>consensus
UGAAGGGGUGGCUGUACCCAUAUAUACACUUAUACAUAUAUAUUU____GUAUAUGGU___AGUUACACAUGUGUUUCCAUGCACAUUCAAUUGA
.......((((((....((((((((......(((......)))......))))))))....))))))..((((((......))))))........ (-16.08 = -15.70 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:19 2006