Locus 4550

Sequence ID 3L_DroMel_CAF1
Location 13,092,044 – 13,092,138
Length 94
Max. P 0.824667
window7105

overview

Window 5

Location 13,092,044 – 13,092,138
Length 94
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 89.48
Mean single sequence MFE -24.20
Consensus MFE -17.12
Energy contribution -16.60
Covariance contribution -0.52
Combinations/Pair 1.17
Mean z-score -2.49
Structure conservation index 0.71
SVM decision value 0.69
SVM RNA-class probability 0.824667
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13092044 94 - 23771897
UGCCGGUGCAC-AGGGAAAAUGUAUAAUUAAAGGCAAAUUUCCACGGC--------AGUAUGCUGGCUGAAAGGA-------AAAUCUGCUAAAUUAAGAGC-AGAAUGAA
((((.(((((.-........))))).......))))..(((((.((((--------((....)).))))...)))-------)).((((((........)))-)))..... ( -23.00)
>DroSec_CAF1 79676 95 - 1
UGCCGGUGCACCAGGGAAAAUGUAUAAUUAAAGGCAAAUUUUCACGGC--------AGUAUGCUGGCUGAAAGGA-------AAAUCUGCAAAAUUAAGAGC-AGAAUGAA
((((((....))......(((.....)))...))))..((((((.(.(--------((....))).)))))))..-------...(((((..........))-)))..... ( -20.60)
>DroSim_CAF1 77311 94 - 1
UGCCGGUGCAC-AGGGAAAAUGCAUAAUUAAAGGCAAAUUUCCACGGC--------AGUAUGCUGGCUGAAAGGA-------AAAUCUGCUAAAUUAAGAGC-AGAAUGAA
((((.(((((.-........))))).......))))..(((((.((((--------((....)).))))...)))-------)).((((((........)))-)))..... ( -25.00)
>DroEre_CAF1 76269 101 - 1
UGCCGGUGCAA-AGGGAAAAUGUAUAAUUAAAAGCAAAUUUCCACGGC--------AGUGUGCCGGCUGAAAGGAAAAUGGAAAAUCUGCUAAAUUAAGAGC-AGAAUGAA
.(((((..((.-.((((((.(((..........)))..))))).)...--------..))..)))))..................((((((........)))-)))..... ( -27.80)
>DroYak_CAF1 78752 103 - 1
UGCCGGUGCAC-AGGGAAAAUGUAUAAUUAAAGGCAAAUUUCCACAGCAUUUCCACAGUACGCCGGCUGAAAGGA-------AAAUCUGCUAAAUUAAGAGCCAGAAUGAA
.(((((((.((-..(((((.(((..((((.......))))...)))...)))))...)).)))))))........-------...((((((........)).))))..... ( -24.60)
>consensus
UGCCGGUGCAC_AGGGAAAAUGUAUAAUUAAAGGCAAAUUUCCACGGC________AGUAUGCUGGCUGAAAGGA_______AAAUCUGCUAAAUUAAGAGC_AGAAUGAA
.(((((((.....(((((..(((..........)))..)))))((............)).)))))))..................((((((........))).)))..... (-17.12 = -16.60 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:17 2006