Locus 455

Sequence ID 3L_DroMel_CAF1
Location 1,326,685 – 1,326,780
Length 95
Max. P 0.764088
window662

overview

Window 2

Location 1,326,685 – 1,326,780
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.89
Mean single sequence MFE -18.88
Consensus MFE -17.92
Energy contribution -17.92
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -1.19
Structure conservation index 0.95
SVM decision value 0.51
SVM RNA-class probability 0.764088
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1326685 95 - 23771897
UUAAACUAAAAUCGGUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCAGGUUUUGCCAUAGCGAAACCAUUUUGUAUU
.((((((......))))))............(((((((...((..((((((...))))))..)).((((((((....)))))))))))))))... ( -20.80)
>DroSec_CAF1 7125 95 - 1
UUAAACUAAAAUCGGUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCCGGUUUUGCCAUAGCUAAACCAUUUUGUAUU
......((((((.(((((((((..((((...))))......((..((((((...))))))...))((.....)).))).)))))))))))).... ( -17.10)
>DroSim_CAF1 7120 95 - 1
UUAAACUAAAAUCGGUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCAGGUUUUGCCAUAGCUAAACCAUUUUGUAUU
......((((((.(((((((((..((((...))))......((..((((((...))))))..)).((.....)).))).)))))))))))).... ( -17.20)
>DroEre_CAF1 7128 95 - 1
UUAAAUUAAAAUCGUUUCACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCGGGUUUUGCCAUAGCGAAAUCAUUUUGUAUU
........(((((((..((((.(.((((...))))....).)))).)))))))...(((((....((((((((....))))))))...))))).. ( -20.80)
>DroYak_CAF1 7168 95 - 1
CUAAAUUAAAAUCGUUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCAGGUUUUGCCAUAGCGAAAUCAUUUUGUAUU
...(((((((.((((....(((..((((...))))....)))....)))))))))))........((((((((....)))))))).......... ( -18.50)
>consensus
UUAAACUAAAAUCGGUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCAGGUUUUGCCAUAGCGAAACCAUUUUGUAUU
........((((((...((((.(.((((...))))....).))))..))))))...(((((....((((((((....))))))))...))))).. (-17.92 = -17.92 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:12 2006