Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,326,685 – 1,326,780 |
Length | 95 |
Max. P | 0.764088 |
Location | 1,326,685 – 1,326,780 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 95.89 |
Mean single sequence MFE | -18.88 |
Consensus MFE | -17.92 |
Energy contribution | -17.92 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.19 |
Structure conservation index | 0.95 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1326685 95 - 23771897 UUAAACUAAAAUCGGUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCAGGUUUUGCCAUAGCGAAACCAUUUUGUAUU .((((((......))))))............(((((((...((..((((((...))))))..)).((((((((....)))))))))))))))... ( -20.80) >DroSec_CAF1 7125 95 - 1 UUAAACUAAAAUCGGUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCCGGUUUUGCCAUAGCUAAACCAUUUUGUAUU ......((((((.(((((((((..((((...))))......((..((((((...))))))...))((.....)).))).)))))))))))).... ( -17.10) >DroSim_CAF1 7120 95 - 1 UUAAACUAAAAUCGGUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCAGGUUUUGCCAUAGCUAAACCAUUUUGUAUU ......((((((.(((((((((..((((...))))......((..((((((...))))))..)).((.....)).))).)))))))))))).... ( -17.20) >DroEre_CAF1 7128 95 - 1 UUAAAUUAAAAUCGUUUCACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCGGGUUUUGCCAUAGCGAAAUCAUUUUGUAUU ........(((((((..((((.(.((((...))))....).)))).)))))))...(((((....((((((((....))))))))...))))).. ( -20.80) >DroYak_CAF1 7168 95 - 1 CUAAAUUAAAAUCGUUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCAGGUUUUGCCAUAGCGAAAUCAUUUUGUAUU ...(((((((.((((....(((..((((...))))....)))....)))))))))))........((((((((....)))))))).......... ( -18.50) >consensus UUAAACUAAAAUCGGUUUACUAAGUCGCUAAGCGAAGUAUAGGUGUAUGAUUUAAUUAUAAUCCAGGUUUUGCCAUAGCGAAACCAUUUUGUAUU ........((((((...((((.(.((((...))))....).))))..))))))...(((((....((((((((....))))))))...))))).. (-17.92 = -17.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:12 2006