Locus 4548

Sequence ID 3L_DroMel_CAF1
Location 13,088,125 – 13,088,220
Length 95
Max. P 0.711872
window7102

overview

Window 2

Location 13,088,125 – 13,088,220
Length 95
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 77.99
Mean single sequence MFE -35.60
Consensus MFE -26.21
Energy contribution -27.10
Covariance contribution 0.89
Combinations/Pair 1.15
Mean z-score -1.14
Structure conservation index 0.74
SVM decision value 0.38
SVM RNA-class probability 0.711872
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13088125 95 - 23771897
UGAUUUUACGAAGUGCCUGCUGCACAAACGAUACCUCGGCUGGCCACUUUUGCCGGGGUGGU----UGAGCGGUACA-------------GAGCGGUAACAG---AGCCGUUUGA
............(((((.(((...(((....(((((((((...........))))))))).)----)))))))))).-------------(((((((.....---.))))))).. ( -34.60)
>DroSec_CAF1 75767 95 - 1
UGAUUUUACGAAGUGCCUGCUGCACAAACGAUACCUCGGCUGCCCACAUUUGCCGGGGUGGU----UGAGCGGUACA-------------GAGCGGUAACAG---AGCCGUUUGA
............(((((.(((...(((....(((((((((...........))))))))).)----)))))))))).-------------(((((((.....---.))))))).. ( -34.60)
>DroSim_CAF1 73391 95 - 1
UGAUUUUACGAAGUGCCUGCUGCACAAACGAUACCUCGGCUGCCCACAUUUGCCGGGGUGGU----UGAGCGGUACA-------------GAGCGGUAACAG---AGCCGUUUGA
............(((((.(((...(((....(((((((((...........))))))))).)----)))))))))).-------------(((((((.....---.))))))).. ( -34.60)
>DroEre_CAF1 72327 95 - 1
UGAUUUUACGAAGUGCCUGCUGCACAAACGAUACCUCGGCUGCCCCGUUUUGCCGGGGUGGU----UGAGCGGUACA-------------GAGCGGUAACAG---AGCCGUUUGA
......(((...((((.....))))........(((((((..(((((......)))))..))----)))).))))..-------------(((((((.....---.))))))).. ( -36.30)
>DroYak_CAF1 74773 108 - 1
UGAUUUUACGAAGUGCCUGCUGCACAAACGAUACCUCGGCUGCCCAGUUUUGCCGGGGUGGU----UGAGCGGUACAGAGCGGUGGUACAGAGCGGUAACAG---AGCCGUUUGA
............(((((((((((.(((....(((((((((...........))))))))).)----)).)))))).........))))).(((((((.....---.))))))).. ( -38.90)
>DroAna_CAF1 69578 98 - 1
UGAUUUUAAGACUCCAGAGUCGCAAUGACGAUACCUCGGCUGGCCGCU------CGGAUGGUCGGCUGAACGGCG------GGUGGU-----UCUGUGGCAGGCAGGCAGGCCGG
.........(.(..((((..(((.....((.....(((((((((((..------....)))))))))))....))------.)))..-----))))..)).(((......))).. ( -34.60)
>consensus
UGAUUUUACGAAGUGCCUGCUGCACAAACGAUACCUCGGCUGCCCACUUUUGCCGGGGUGGU____UGAGCGGUACA_____________GAGCGGUAACAG___AGCCGUUUGA
............(((((.(((.((.......(((((((((...........)))))))))......))))))))))..............(((((((.........))))))).. (-26.21 = -27.10 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:14 2006